View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16413_low_1 (Length: 598)
Name: NF16413_low_1
Description: NF16413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16413_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 16315432 - 16314853
Alignment:
| Q |
1 |
ccctaccctgctaccccattaatcaaacatcacaaaatctttgcaaacaatacctagaaaaaccccatatcctaaattcaattcnnnnnnnnnnnnnnnn |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16315432 |
ccctaccctgctaccccattaatcaaacatcacaaaatctttgcaaacaatacctagaaaaaccccatatcctaaattcaattcaaaaaaccaaacaaaa |
16315333 |
T |
|
| Q |
101 |
ncacatgatcatacatgcatacaaaaaggacatttttacattaccagtttcctcgtccgcgcgagacttccatccctcacacctaagaccagtcccccat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16315332 |
acacatgatcatacatgcatacaaaaaggacatttttacattaccagtttcctcgtccgcgcgagacttccatccctcacacctaagaccagtcccccat |
16315233 |
T |
|
| Q |
201 |
tgcatcctataacaagtattctgttcaataacaggcttcccactccaatcccctttaagcctaggattaaaatgcaatatctttggtggctcttcattat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16315232 |
tgcatcctataacaagtattctgttcaataacaggcttcccactccaatcccctttaagcctaggattaaaatgcaatatctttggtggctcttcattat |
16315133 |
T |
|
| Q |
301 |
caacagctttcaaaccctgcaactccaacataaactgtgaaaccataaccttttcatcaccatttctcacaccaccaatctttggatcactctcaccatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16315132 |
caacagctttcaaaccctgcaactccaacataaactgtgaaaccataaccttttcatcaccatttctcacaccaccaatctttggatcactctcaccatg |
16315033 |
T |
|
| Q |
401 |
tgcaaaacgtggtgtccccacaacagtcacatgagaccaaagtgtcaacccacaattcaaaaccataacccctttcaacttctccctaaactcaaaccca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16315032 |
tgcaaaacgtggtgtccccacaacagtcacatgagaccaaagtgtcaacccacaattcaaaaccataacccctttcaacttctccctaaactcaaaccca |
16314933 |
T |
|
| Q |
501 |
gaagctgaaactgaactcaaacaagtatcagaatccgaaccatttttggcttttttaaaacccgaaaaactcttaacttt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16314932 |
gaagctgaaactgaactcaaacaagtatcagaatccgaaccatttttggcttttttaaaacccgaaaaactcttaacttt |
16314853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 164 - 358
Target Start/End: Original strand, 25872682 - 25872876
Alignment:
| Q |
164 |
agacttccatccctcacacctaagaccagtcccccattgcatcctataacaagtattctgttcaataacaggcttcccactccaatcccctttaagccta |
263 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||| ||||| | |||| |
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| T |
25872682 |
agacttccatccctcacacctaagtgaagaaccccattgcattctataacaagtattctgctcaatcaccggcttcccactataatcgcctttcaaccta |
25872781 |
T |
|
| Q |
264 |
ggattaaaatgcaatatctttggtggctcttcattatcaacagctttcaaaccctgcaactccaacataaactgtgaaaccataaccttttcatc |
358 |
Q |
| |
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||||||||||||| |||||| ||||| || || |||||||| | ||||| || || | ||||| |||||||||||| || | ||||||||||| |
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| T |
25872782 |
ggattaaaatgcagtatcttaggtggttcctccttatcaactaccttcaatccttgaagctccatcataaactgtgacactaacaccttttcatc |
25872876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 195 - 328
Target Start/End: Complemental strand, 44384713 - 44384580
Alignment:
| Q |
195 |
ccccattgcatcctataacaagtattctgttcaataacaggcttcccactccaatcccctttaagcctaggattaaaatgcaatatctttggtggctctt |
294 |
Q |
| |
|
||||| |||||||||||||||| || | |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||| ||||||| |||| |
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| T |
44384713 |
ccccactgcatcctataacaagagttaagctcaataacaggcttcccactccaatcccctttcaaccttggattgaaatgcaaaatccttggtgggtctt |
44384614 |
T |
|
| Q |
295 |
cattatcaacagctttcaaaccctgcaactccaa |
328 |
Q |
| |
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|| || || | ||||||||||||||||||||| |
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|
| T |
44384613 |
caccttccaccgttttcaaaccctgcaactccaa |
44384580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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