View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16413_low_2 (Length: 529)
Name: NF16413_low_2
Description: NF16413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16413_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 511
Target Start/End: Original strand, 26621770 - 26622264
Alignment:
| Q |
10 |
gcacagactgggtttttggaatggaatttggaagttgaaggctcctccgaaggtgaagaacttgatatggagaatatgccggggatgcttaccagctcgt |
109 |
Q |
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| T |
26621770 |
gcacatactgggtttttggaatggaatttggaagttgaaggctcctccgaaggtgaagaacttgatatggagaatatgtcggggatgcttaccaacttgt |
26621869 |
T |
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| Q |
110 |
gccaaattgttagataaaagagtgaactgtgcctctgtgtgttctatgtgtgaagattgtaggaaattatgaagatgaccttcatgttctgtttgattgt |
209 |
Q |
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| T |
26621870 |
gccaaattgttagataaaagagtgaactgtacctctgtgtgttctatgtgtgatg-------gaaattatgaagatgaccttcatgttttgtttgattgt |
26621962 |
T |
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| Q |
210 |
caaagagcgaggagcgtttggcgggacagtcacctctcaaacgatatatatgtggcgatgcaaacaaataacacatcagcagatatagtgtttgccttac |
309 |
Q |
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| T |
26621963 |
caaagagcgaggagcgtttggcgggacagtcacctctcaaacgatatatatgtggcgatgcaaacaaataacacatcagcagatatagtgtttgccttac |
26622062 |
T |
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| Q |
310 |
tacaaaatctgccacatactaaaatccagttatttgttactttagtgtggagcttgtggaaaagccggaatattcaagtttggcaaaatatgtccgagag |
409 |
Q |
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| T |
26622063 |
tacaaaatctgccacatactaaaatccagttatttgttactttagtgtggagcttgtggaaaagctggaatattcaagtttggcaaaatatgtccgagag |
26622162 |
T |
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| Q |
410 |
cagccagtcaattgttgagcgtgcacatcagttgttgcatgggtggacagcagcaaacaggtgcaggaacaggtttgacaggtctgtaattggtgctgaa |
509 |
Q |
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| T |
26622163 |
cagccagtcaattgttgagcgtgcacatcagttgctgcatgggtggacaacagcaaacaggtgcaggaacaggtttgacaggtctgtaattggtgctgaa |
26622262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 511
Target Start/End: Original strand, 7175229 - 7175722
Alignment:
| Q |
11 |
cacagactgggtttttggaatggaatttggaagttgaaggctcctccgaaggtgaagaacttgatatggagaatatgccggggatgcttaccagctcgtg |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
7175229 |
cacagaccgggtttttggaatggaatttggaagttgaaggcttctccgaaggtgaagaacttgatatggagaatatgcctgggatgcttaccaactcgtg |
7175328 |
T |
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| Q |
111 |
ccaaattgttagataaaagagtgaactgtgcctctgtgtgttctatgtgtgaagattgtaggaaattatgaagatgaccttcatgttctgtttgattgtc |
210 |
Q |
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| T |
7175329 |
ccaaactgttagataaaagagtgaactgtacctctatgtgttctatgtgtgatg-------gaaattatgaagatgaccttcatgttctgtttgattgtc |
7175421 |
T |
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| Q |
211 |
aaagagcgaggagcgtttggcgggacagtcacctctcaaacgatatatatgtggcgatgcaaacaaataacacatcagcagatatagtgtttgccttact |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
7175422 |
aaagagcgaggagcatttggcgggacagtcacctctcaaacgatatatatgtggcgatgcaaacaaataacacagcagcagatatagtgtccgccttact |
7175521 |
T |
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| Q |
311 |
acaaaatctgccacatactaaaatccagttatttgttactttagtgtggagcttgtggaaaagccggaatattcaagtttggcaaaatatgtccgagagc |
410 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
7175522 |
gcaaaatctgccacatactaaaattcagttatttgttactttagtgtggagcttgtggaaaagtcggaatattcaagtttggcaaaatatgcccgagagc |
7175621 |
T |
|
| Q |
411 |
agccagtcaattgttgagcgtgcacatcagttgttgcatgggtggacagcagcaaacaggtgcaggaacaggtttgacaggtctgtaattggtgctgaaa |
510 |
Q |
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| T |
7175622 |
agccagtcaattgttgagcgtgcacatcagttgctgcatgggtggaaagcagcaaacaattgcaggaacaggtttgacaggtctgtaattggtgctgaaa |
7175721 |
T |
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