View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16413_low_3 (Length: 460)
Name: NF16413_low_3
Description: NF16413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16413_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 2 - 444
Target Start/End: Complemental strand, 24262159 - 24261718
Alignment:
| Q |
2 |
gcctcactttcttctataatatgcctaggtttcctatcaaagtcatatgtgtgaatatgaaaagtaaaactcgcttcagcaatgcacctttacaaaatct |
101 |
Q |
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| T |
24262159 |
gcctcactttcttctataatatgcctaggtg-cctatcaaagtcatatgagtgaatatgaaaagtaaaactcgcttgagcaatgtatctttacaaaatct |
24262061 |
T |
|
| Q |
102 |
agattgccatatgaacttcactgattaaagctaaatttgacaaccactttcaatggtataacctaattagatttgtaatatttagtaggatacaaataca |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24262060 |
agattgccatatgaacttcactatttaaagctaaatttgacaaccactttcaatggtataacctaattagatttgtaatatttagtatgatacaaataca |
24261961 |
T |
|
| Q |
202 |
attgtcatgtaactaaggaaagtaatcacattccataaatcagtgtataactatatagaaaatcctggtacaggaaggccaaatgcaatttttcttatct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24261960 |
attgtcatgtaactaaggaaagtaatcacattccataaatcagcgtataaatatatagaaaatcctggtacaggaaggccaaatgcaatttttcttatct |
24261861 |
T |
|
| Q |
302 |
tatccatagaaaacttaccgcacactgtcaattaaattatcaagcagtaatataacattggataaagggttttattaaaactgttttcatttcaacatga |
401 |
Q |
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| T |
24261860 |
tatccatagaaaacttactgcacactgtcaattaaattatcaagcagtaatataacattggataaagggttttattaaaactgttttcatttcaacaaga |
24261761 |
T |
|
| Q |
402 |
tgagcacccaataaaaggcagtgaaaataaacgtaaaagtatt |
444 |
Q |
| |
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| T |
24261760 |
tgagcacccaataaaaggcagtgaaaataaacgtaaaagtatt |
24261718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 55 - 444
Target Start/End: Original strand, 14226905 - 14227293
Alignment:
| Q |
55 |
aatatgaaaagtaaaactcgcttcagcaatgcacctttacaaaatctagattgccatatgaa-cttcactgattaaagctaaatttgacaaccactttca |
153 |
Q |
| |
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|||||||| |||||||||| ||| |||||| |||||||||||||||||||||| || ||||| |||| || | |||||||||||||||||||||||| |
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| T |
14226905 |
aatatgaagagtaaaactcacttgagcaattcacctttacaaaatctagattgtcaaatgaaacttcgctatagagagctaaatttgacaaccactttca |
14227004 |
T |
|
| Q |
154 |
atggtataacctaattagatttgtaatatttagtaggatacaaatacaattgtcatgtaactaaggaaagtaatcacattccataaatcagtgtataact |
253 |
Q |
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||| |||||||||||||| ||||| |||||| |||||||||||||| |||||||| | || ||||||| ||||| | ||| |||||||| | |
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| T |
14227005 |
ctggcataacctaattagagttgta---tttagtgggatacaaatacaactgtcatgtcaacgagaaaagtaaccacatccagtaa----gtgtataaat |
14227097 |
T |
|
| Q |
254 |
atatagaaaatcctggtacaggaaggccaaatgcaatttttcttatcttatccatagaaaacttaccgcacactgtcaattaaattatcaagcagtaata |
353 |
Q |
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|||| ||| | |||||||| ||| | || |||| |||||||| ||||||||||||||||| ||||||| | ||||| ||||| |||||||||| |
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| T |
14227098 |
atatctgaaaccttggtacagaaagcaccggtgtgatttctcttatctcatccatagaaaacttactgcacactccccattaatttatcgagcagtaata |
14227197 |
T |
|
| Q |
354 |
taacattggataaagggttttattaa-----aactgttttcatttcaacatgatgagcacccaataaaaggcagtgaaaataaacgtaaaagtatt |
444 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
14227198 |
taacacgggataaagggttttattaatttaaaactgttttcagttcaacatgatcagcatccaacaaaaggcagtgaaaataaacgtaaaagtatt |
14227293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 3382390 - 3382426
Alignment:
| Q |
6 |
cactttcttctataatatgcctaggtttcctatcaaa |
42 |
Q |
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|||||||||||||||||| ||||||| |||||||||| |
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| T |
3382390 |
cactttcttctataatattcctaggtgtcctatcaaa |
3382426 |
T |
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