View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_high_17 (Length: 223)
Name: NF16414_high_17
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 153089 - 152903
Alignment:
| Q |
18 |
aagaatcttggcaagacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacacc |
117 |
Q |
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| T |
153089 |
aagaatcttggcaagacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacacc |
152990 |
T |
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| Q |
118 |
aaccataatgtagtcatggtacggttccaaatattctgataatggttattaagcttattaatagtatcatagtaacaatttgaattc |
204 |
Q |
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| T |
152989 |
aaccataatgtagtcatggtacggttccaaatattctgataatggttattaagcttattaatagtatcatagtaacaagttgaattc |
152903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 161565 - 161380
Alignment:
| Q |
19 |
agaatcttggcaagacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161565 |
agaatcttggcaagacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacacca |
161466 |
T |
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| Q |
119 |
accataatgtagtcatggtacggttccaaatattctgataatggttattaagcttattaatagtatcatagtaacaatttgaattc |
204 |
Q |
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| T |
161465 |
accataatgcagccatggtacggttccaaatattctgataatgcttattaagctcattaataatctcatagtaacaagttgaattc |
161380 |
T |
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