View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_high_3 (Length: 446)
Name: NF16414_high_3
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 697794 - 698000
Alignment:
| Q |
15 |
gacatcatctaaatcaaatccagctccttcttaacttcaaatccaaacactgaaacagagaatcaatattacaccaatcatgaaataattttttgtctgg |
114 |
Q |
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| T |
697794 |
gacatcatctaaatcaaattcagctccttcttaacttcaaatccaaacactgaaacagagaatcaatattacaccaatcatgaaataattttttgtctgg |
697893 |
T |
|
| Q |
115 |
ttagaaggaaatcaaactatagtagtacaaggctgaatattgttattttcattatttaagcaatagactgttatgcatcatgctgatttgattgcactca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
697894 |
ttagaaggaaatcaaactatagtagtacaaggctgaatattgttattttcattatttaagcaatagactgttatgcatcatgctgatttgattgcactca |
697993 |
T |
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| Q |
215 |
tgatcaa |
221 |
Q |
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||||||| |
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| T |
697994 |
tgatcaa |
698000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 766092 - 766298
Alignment:
| Q |
15 |
gacatcatctaaatcaaatccagctccttcttaacttcaaatccaaacactgaaacagagaatcaatattacaccaatcatgaaataattttttgtctgg |
114 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766092 |
gacatcatctaaatcaaattcagctccttcttaacttcaaatccaaacactgaaacagagaatcaatattacaccaatcatgaaataattttttgtctgg |
766191 |
T |
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| Q |
115 |
ttagaaggaaatcaaactatagtagtacaaggctgaatattgttattttcattatttaagcaatagactgttatgcatcatgctgatttgattgcactca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766192 |
ttagaaggaaatcaaactatagtagtacaaggctgaatattgttattttcattatttaagcaatagactgttatgcatcatgctgatttgattgcactca |
766291 |
T |
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| Q |
215 |
tgatcaa |
221 |
Q |
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||||||| |
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| T |
766292 |
tgatcaa |
766298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 245 - 430
Target Start/End: Original strand, 697998 - 698183
Alignment:
| Q |
245 |
caaaatctgagtatatactttcattctgatcaatcaaaagaatcattcttccctgaatttattagttgagtcaagttttccattctagttagtgcaaaac |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
697998 |
caaaatctgagtatatactttcattctgatcaatcaaaagaatcattcttccctgaatttattagttgagtcaagttttccattctagttagtgcaaaac |
698097 |
T |
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| Q |
345 |
atttatcagttatgttcgctaacgttcatttaaaccatttaaactttatagatccattcaaacctattaaacttccaagaacaaat |
430 |
Q |
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| T |
698098 |
atttatcagttatgttcgctaacgttcatttaaaccatttaaactttatagatccattcaaacctattaaacttccaagaacaaat |
698183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 245 - 430
Target Start/End: Original strand, 766296 - 766481
Alignment:
| Q |
245 |
caaaatctgagtatatactttcattctgatcaatcaaaagaatcattcttccctgaatttattagttgagtcaagttttccattctagttagtgcaaaac |
344 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766296 |
caaaatctgagtatatactttcattctgatcaatcaaaagaatcattcttccctgaatttattagttgagtcaagttttccattctagttagtgcaaaac |
766395 |
T |
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| Q |
345 |
atttatcagttatgttcgctaacgttcatttaaaccatttaaactttatagatccattcaaacctattaaacttccaagaacaaat |
430 |
Q |
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| T |
766396 |
atttatcagttatgttcgctaacgttcatttaaaccatttaaactttatagatccattcaaacctattaaacttccaagaacaaat |
766481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 244 - 430
Target Start/End: Complemental strand, 36963944 - 36963758
Alignment:
| Q |
244 |
acaaaatctgagtatatactttcattctgatcaatcaaaagaatcattcttccctgaatttattagttgagtcaagttttccattctagttagtgcaaaa |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963944 |
acaaaatctgagtatatactttcattctgatcaatcaaaagaatcattcttccctgaatttattagttgagtcaagttttccattctagttagtgcaaaa |
36963845 |
T |
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| Q |
344 |
catttatcagttatgttcgctaacgttcatttaaaccatttaaactttatagatccattcaaacctattaaacttccaagaacaaat |
430 |
Q |
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| T |
36963844 |
catttatcagttatgttcgctaacgttcatttaaaccatttaaactttatagatccattcaaacctattaaacttccaagaacaaat |
36963758 |
T |
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