View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_high_6 (Length: 424)
Name: NF16414_high_6
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 21854732 - 21854337
Alignment:
| Q |
20 |
tttacacacatttgtattgcaccatttagatatttggatagttattttaggaaatggatttttcacattacacatacaaatcattctcatcttctctttg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21854732 |
tttacacacatttgtattgcaccatttagatatttgggtagttattttaggaaatggatttttcacattacacatacaaatcattctcatcttctctttg |
21854633 |
T |
|
| Q |
120 |
cacttttgcagaacccattcttccttcaatgaccgatcaactcaatgacaagaaaatctcaaagataaaggcgtatttcagacttctcgataaggatcga |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21854632 |
tacttttgcagaacccaatcttccttcaatgaccgatcaactcaatgacaagcaaatctcaaagataaaggcgtatttcagacttctcgataaggatcaa |
21854533 |
T |
|
| Q |
220 |
gatttttctattgataatgatgaacttcagactctaatacggtcgcttggcctaaaccaaacgtttttcggcctgatggtagcgatgaataagtctgacg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |
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| T |
21854532 |
gatttttctattgataatgatgaacttcagactctaatacggtcgcttggcctaaacccaacgtttttcggcctgatggtagcaatgaataagtttgacg |
21854433 |
T |
|
| Q |
320 |
ctgacggaaatggttctattgatttcaccgaagaagattttatcatatctttccctaagcctgacaaggatcataatggttttgtctctgcatctg |
415 |
Q |
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| T |
21854432 |
ctgacggaaatggtaccattgatttcaccgaagaagattttatcatatctttccctaagcctgacaaggatcataatggttttgtctctgcatctg |
21854337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 21843589 - 21843191
Alignment:
| Q |
17 |
cactttacacacatttgtattgcaccatttagatatttggatagttattttaggaaatggatttttcacattacacatacaaatcattctcatcttctct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
21843589 |
cactttacacacatttgtattgcaccatttagatatttgtgtagttattttaggaaatggatttttcacattacacacacaaatcattatcatcttctct |
21843490 |
T |
|
| Q |
117 |
ttgcacttttgcagaacccattcttccttcaatgaccgatcaactcaatgacaagaaaatctcaaagataaaggcgtatttcagacttctcgataaggat |
216 |
Q |
| |
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||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
21843489 |
ttgtacttttgcagaacccaatcttccttcaatggccgatcaactcaatgacaagcaaatctcaaagataaaggcgtatttcagcctcatcgataaggat |
21843390 |
T |
|
| Q |
217 |
cgagatttttctattgataatgatgaacttcagactctaatacggtcgcttggcctaaaccaaacgtttttcggcctgatggtagcgatgaataagtctg |
316 |
Q |
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||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||| ||||||| |||||||||||| ||||||||||| |
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| T |
21843389 |
ggagatgtttctattgataatgaagaacttgacactctaatacggtctactggcctaaacccaactgatttcggcttgatggtagcgaggaataagtctg |
21843290 |
T |
|
| Q |
317 |
acgctgacggaaatggttctattgatttcaccgaagaagattttatcatatctttccctaagcctgacaaggatcataatggttttgtctctgcatctg |
415 |
Q |
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| |||||||||||||| | ||||| |||||| ||||||| || ||||| ||||| |||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
21843289 |
ccactgacggaaatggtaccattgacttcaccaaagaagagcttctcatagctttctctaagcctaacacggatcataatggttttgtcactgcatctg |
21843191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 21859230 - 21858832
Alignment:
| Q |
17 |
cactttacacacatttgtattgcaccatttagatatttggatagttattttaggaaatggatttttcacattacacatacaaatcattctcatcttctct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
21859230 |
cactttacacacatttgtattgcaccatttagatatttgtgtagttattttaggaaatggatttttcacattacacatacaaatcattatcattttctct |
21859131 |
T |
|
| Q |
117 |
ttgcacttttgcagaacccattcttccttcaatgaccgatcaactcaatgacaagaaaatctcaaagataaaggcgtatttcagacttctcgataaggat |
216 |
Q |
| |
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||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
21859130 |
ttgtacttttgcagaacccaatcttccttcaatggccgatcaactcaatgacaagcaaatctcaaagataaaggcgtatttcagcctcatcgataaggat |
21859031 |
T |
|
| Q |
217 |
cgagatttttctattgataatgatgaacttcagactctaatacggtcgcttggcctaaaccaaacgtttttcggcctgatggtagcgatgaataagtctg |
316 |
Q |
| |
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||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||| ||||||| |||||||||||| || |||||||| |
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| T |
21859030 |
ggagatgtttctattgataatgaagaacttgacactctaatacggtctactggcctaaacccaactgatttcggcttgatggtagcgaggagtaagtctg |
21858931 |
T |
|
| Q |
317 |
acgctgacggaaatggttctattgatttcaccgaagaagattttatcatatctttccctaagcctgacaaggatcataatggttttgtctctgcatctg |
415 |
Q |
| |
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| |||||||||||||| | |||||||||||| ||||||| || ||||| |||| |||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
21858930 |
ccactgacggaaatggtaccattgatttcaccaaagaagagcttctcatagttttctctaagcctgacacggatcataatggttttgtcactgcatctg |
21858832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 21834216 - 21834003
Alignment:
| Q |
25 |
acacatttgtattgcaccatttagatatttggatagttattttaggaaatggatttttcacattacacatacaaatcattctcatcttctctttgcactt |
124 |
Q |
| |
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|||||||||||||||||| |||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21834216 |
acacatttgtattgcacc-tttagatatttgtgttgttattttagaaaatggatttttcaaattacacatacaaatcattctcatcttctctttgcactt |
21834118 |
T |
|
| Q |
125 |
ttgcagaacccattcttccttcaatgaccgatcaactcaatgacaagaaaatctcaaagataaaggcgtatttcagacttctcgataaggatcgagattt |
224 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
21834117 |
ttgcagaacccaatcttccttcaatggccgatcaactcaatcacaatcaaatatcaaagataaaggcgtatttcagcctcatcgataaggatgaagatgg |
21834018 |
T |
|
| Q |
225 |
ttctattgataatga |
239 |
Q |
| |
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|| |||||||||||| |
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| T |
21834017 |
ttttattgataatga |
21834003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 21826701 - 21826622
Alignment:
| Q |
91 |
acatacaaatcattctcatcttctctttgcacttttgcagaacccattcttccttcaatgaccgatcaactcaatgacaa |
170 |
Q |
| |
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||||||||||||||||| |||||||||| ||| ||||||||| | ||||||| ||||| |||||||||||||||||| |
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|
| T |
21826701 |
acatacaaatcattctcctcttctctttttgcttctgcagaaccaaatcttcctccaatggacgatcaactcaatgacaa |
21826622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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