View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16414_high_7 (Length: 395)

Name: NF16414_high_7
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16414_high_7
NF16414_high_7
[»] chr1 (11 HSPs)
chr1 (16-379)||(936017-936380)
chr1 (172-344)||(420010-420179)
chr1 (199-365)||(949106-949275)
chr1 (203-365)||(960082-960247)
chr1 (199-365)||(971399-971556)
chr1 (160-295)||(974970-975105)
chr1 (199-365)||(942129-942286)
chr1 (226-373)||(924013-924157)
chr1 (16-124)||(935954-936059)
chr1 (226-372)||(901764-901907)
chr1 (301-371)||(916034-916104)
[»] scaffold0312 (1 HSPs)
scaffold0312 (172-344)||(10392-10561)


Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 936017 - 936380
Alignment:
Q  16 aatgttggaaaaggtggagttcatgtaaatgcaggtaaaggaaaaccaggtggtggaacagcagttaatgttggcaaaggtggtgtaaatgttcatgcag 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  936017 aatgttggcaaaggtggagttcatgtaaatgcaggtaaaggaaaaccaggtggtggaacaagagttaatgttggcaaaggtggtgtaaatgttcatgcag 936116  T
Q  116 gaaaaggaagaggaaaaccagtacatgtttcagttggaaacaaatctccatttttgtacaattatgctgcaagtgaaacacagttacatgataaaccaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  936117 gaaaaggaagaggaaaaccagtacatgtttcagttggaaacaaatctccatttttgtacaattatgctgcaagtgaaacacagttacatgataaaccaaa 936216  T
Q  216 tgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  936217 tgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcct 936316  T
Q  316 aaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttct 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  936317 aaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttct 936380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 344
Target Start/End: Complemental strand, 420179 - 420010
Alignment:
Q  172 tacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgc 271  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||| || |||||||| |||||||| ||||||||  |||||||||    
T  420179 tacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcttctttttggaaaaggacttgcatcatggaacaaaactgaacttgc 420080  T
Q  272 aattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttgctaattcaatacctttttc 344  Q
    ||||||| || |||| |||||   |||  |||| |||||||||     |||||||||||||||||||||||||    
T  420079 aattcactaagaccacttcaa---atgcggcaacattcttgccgcgccaagttgctaattcaatacctttttc 420010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 949106 - 949275
Alignment:
Q  199 ttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatg 298  Q
    ||||||||||||| || |||| |||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||  | | || | ||||||| ||     
T  949106 ttacatgataaacaaaatgtaacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattccaagagacaacttcaaataata 949205  T
Q  299 atg---caaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacat 365  Q
    |||   ||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||| | ||||||||    
T  949206 atggaacaaaattcttgcctagagaagttgctaattccatacccttttcatcaaacaaattggaaaacat 949275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 960082 - 960247
Alignment:
Q  203 atgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatg- 301  Q
    ||||||||| || |||| |||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||| | | || | ||||||| || |||     
T  960082 atgataaacaaaatgtaacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcaaagagacaacttcaaataataatgg 960181  T
Q  302 --caaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacat 365  Q
      ||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||| | ||||||||    
T  960182 aacaaaattcttgcctagagaagttgctaattccatacccttttcatcaaacaaaatggaaaacat 960247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 971399 - 971556
Alignment:
Q  199 ttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatg 298  Q
    ||||||||||||| || |||| |||||||||||||  |||| ||||||||||| |||||||| ||||||||||||||||||||          |||  ||    
T  971399 ttacatgataaacaaaatgtaacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcacaaa---------taatagtg 971489  T
Q  299 atgcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacat 365  Q
      |||||||||||||||||||||||||||||||| ||||| ||||| |||| |||| | ||||||||    
T  971490 gagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacat 971556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 974970 - 975105
Alignment:
Q  160 tctccatttttgtacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaa 259  Q
    ||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||  | ||||||||  ||||||| |||||||    
T  974970 tctccatttatttataattatgctgcaagtgagactcaattacatgataaaccaaatgtagcactcttctttctggaaaaggacctgcatcatggaacaa 975069  T
Q  260 agttgaacttgcaattcacaaaaaccaattcaaatg 295  Q
    |  |||||||||||||| | || |||| ||||||||    
T  975070 aactgaacttgcaattctctaagaccacttcaaatg 975105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 942129 - 942286
Alignment:
Q  199 ttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatg 298  Q
    ||||||||||||| || |||  |||||||||||||  |||| ||||||||||| |||||||| ||||||||||||||||||||          |||  ||    
T  942129 ttacatgataaacaaaatgtcacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcacaaa---------taatagtg 942219  T
Q  299 atgcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacat 365  Q
      |||||||||||||||||||||||||||||||| ||||| ||||| |||| |||| | ||||||||    
T  942220 gagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacat 942286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 373
Target Start/End: Original strand, 924013 - 924157
Alignment:
Q  226 ttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttg 325  Q
    |||||||| |||||||| |||||| | || ||||| |||||| ||||||||||||| |||   ||| || |||  |||| ||||||||||   |||||||    
T  924013 ttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacc---tcagattatggagcaacattcttgcctcgtgaagttg 924109  T
Q  326 ctaattcaatacctttttcttcaagcaaagttgaaaacatccttaact 373  Q
    ||||||| ||||| ||||| |||| |||||| ||||||||||||||||    
T  924110 ctaattccataccattttcatcaaacaaagtggaaaacatccttaact 924157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 935954 - 936059
Alignment:
Q  16 aatgttggaaaaggtggagttcatgtaaatgcaggtaaaggaaaaccaggtggtggaacagcagttaatgttggcaaaggtggtgtaaatgttcatgcag 115  Q
    |||||||||||||||||||| |||||  ||||||| |||  ||| |||||||   |||||||||| ||||||||||||||||| ||  ||||  ||||||    
T  935954 aatgttggaaaaggtggagtccatgttgatgcaggaaaaacaaagccaggtg---gaacagcagtcaatgttggcaaaggtggagttcatgtaaatgcag 936050  T
Q  116 gaaaaggaa 124  Q
    | |||||||    
T  936051 gtaaaggaa 936059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 372
Target Start/End: Original strand, 901764 - 901907
Alignment:
Q  226 ttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttg 325  Q
    |||||||| ||||| || |||||||  || ||||| |||||| ||||||||| ||| |||   |||||| |||| | || ||| ||||||   |||||||    
T  901764 ttcttcttggaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacc---tcaaattatgaagtaacatttttgcctcgtgaagttg 901860  T
Q  326 ctaattcaatacctttttcttcaagcaaagttgaaaacatccttaac 372  Q
    ||||||| || || ||||| |||| |||||| ||||| |||||||||    
T  901861 ctaattccattcccttttcatcaaacaaagtggaaaaaatccttaac 901907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 916034 - 916104
Alignment:
Q  301 gcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaa 371  Q
    |||| ||||||||||   ||||| |||||||| ||||| ||||| |||| |||||| ||||||||||||||    
T  916034 gcaacattcttgcctcgtgaagtcgctaattccataccattttcatcaaacaaagtggaaaacatccttaa 916104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 10392 - 10561
Alignment:
Q  172 tacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgc 271  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||| || |||||||| |||||||| ||||||||  |||||||||    
T  10392 tacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcttctttttggaaaaggacttgcatcatggaacaaaactgaacttgc 10491  T
Q  272 aattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttgctaattcaatacctttttc 344  Q
    ||||||| || |||| |||||   |||  |||| |||||||||     |||||||||||||||||||||||||    
T  10492 aattcactaagaccacttcaa---atgcggcaacattcttgccgcgccaagttgctaattcaatacctttttc 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University