View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_1 (Length: 614)
Name: NF16414_low_1
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 17008079 - 17007644
Alignment:
| Q |
1 |
aaaaaggattatagaaaagatttgaatgtggtggagaagttgattagagaggtgacggatagacaatgtggaatttctgaaaagaataatgagaatagtc |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17008079 |
aaaaaggattatagaaaagatttgaatatggtggagaagttgattagagaggtgatggatagacaatgtggaatttctgagaagaataatgagaatagtc |
17007980 |
T |
|
| Q |
101 |
catcttccataagtactgatgagttggaacatgcagatcttgctagtgtttcctctagtacctatgtgaatggagtatcagatgcgctgaaagtgaagag |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
17007979 |
catcttccacaagtactgatgagttggaacatgcagatcatgctagtgtttcctctagtacctatgtgaatggagtatcagaggcgctgaaagcgaagag |
17007880 |
T |
|
| Q |
201 |
tgttgatgtggaagtgaaaaacgtctctgatgaaagcgtaaatgttgaagcgaatgccaaatccaaagaacagaagaaggaatcagataagaagggggaa |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17007879 |
tgttgatgtggaagtgaaaaacatctctgatgaaagcgtaaatgttgaagcgaatgccaaatccaaagaacagaagaaggaatcagataagcagggggaa |
17007780 |
T |
|
| Q |
301 |
gaaaatgaagtgctatgggatgaattggatgcagcccttagagaatcagaaatggtatctaaggtaaacctcctctttaagcacatttaagttgaacttt |
400 |
Q |
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| T |
17007779 |
gagaatgaagtgctatgggatgaattggatgcagcccttagagaatcagaagtggtatctaaggtaaacctcctctttaagcacatttaagttgaacttt |
17007680 |
T |
|
| Q |
401 |
tcatattcattttaatttgtgtactatagggctggt |
436 |
Q |
| |
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| T |
17007679 |
tcatattcattttaatttgtgaactatagggctggt |
17007644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 481 - 598
Target Start/End: Complemental strand, 17007647 - 17007530
Alignment:
| Q |
481 |
tggttattcttcttcttcataccagaatgaaatgccagaggggnnnnnnnnnnnnngtgtaaatgttgctaaagtcgaattcaaatccaaagtcaaatac |
580 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17007647 |
tggttattcttcttcttcataccagaatgaaatgtcagaggggaaaaaagcaaaaagtgtaaacgttgctaaagtcgaattcaaatccaaagtcaaatac |
17007548 |
T |
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| Q |
581 |
aatgccaaacctaataac |
598 |
Q |
| |
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|||||||||||||||||| |
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| T |
17007547 |
aatgccaaacctaataac |
17007530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 288 - 453
Target Start/End: Complemental strand, 16976263 - 16976097
Alignment:
| Q |
288 |
taagaagggggaagaaaatgaagtgctatgggatgaattggatgcagcccttagagaatcagaaatggtatctaaggtaaacctcctctttaagcacatt |
387 |
Q |
| |
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|||| ||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||| |
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| T |
16976263 |
taaggaggaggaagagaatgaagtgatatgggatgaattggaaacagcccttagagaatcagaagctgtatccaaggtaatcatcctctttaagaacatt |
16976164 |
T |
|
| Q |
388 |
-taagttgaacttttcatattcattttaatttgtgtactatagggctggtgcttaagctgattttga |
453 |
Q |
| |
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|| ||||||||| | | || || |||||||||| |||||||| || ||||||||| ||||||||| |
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| T |
16976163 |
aaaatttgaactttgcgttttaatgttaatttgtgaactataggactagtgcttaagatgattttga |
16976097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 453
Target Start/End: Complemental strand, 16967457 - 16967291
Alignment:
| Q |
288 |
taagaagggggaagaaaatgaagtgctatgggatgaattggatgcagcccttagagaatcagaaatggtatctaaggtaaacctcctctttaagcacatt |
387 |
Q |
| |
|
|||| ||| |||||| ||||||||| |||||||||||||||| | |||||||||||| |||| |||| ||||||| | ||||||||||| ||||| |
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|
| T |
16967457 |
taaggaggaggaagagaatgaagtgttatgggatgaattggaaacgacccttagagaattagaagctgtatgcaaggtaatcatcctctttaagaacatt |
16967358 |
T |
|
| Q |
388 |
-taagttgaacttttcatattcattttaatttgtgtactatagggctggtgcttaagctgattttga |
453 |
Q |
| |
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|| ||||||||| | | || || |||||||||| |||||||| || ||||||||| ||||||||| |
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| T |
16967357 |
aaaatttgaactttgcgttttaatgttaatttgtgaactataggactagtgcttaagatgattttga |
16967291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 16968600 - 16968535
Alignment:
| Q |
90 |
tgagaatagtccatcttccataagtactgatgagttggaacatgcagatcttgctagtgtttcctc |
155 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||| |||| ||||| ||||||||||||||| |
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| T |
16968600 |
tgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctc |
16968535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 453
Target Start/End: Complemental strand, 16823236 - 16823102
Alignment:
| Q |
314 |
tatgggatgaattggatgcagcccttagagaatcagaaatggtatctaaggtaaacctcctctttaagcacatttaagtt-gaacttttcatattcattt |
412 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||| | ||| | ||||| ||| ||||||||| |||||||| || |||| || ||| || |
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| T |
16823236 |
tatgggatcaaatggatacagcccttagagaatcagaagctgaatccatggtaatcctgctctttaagaacatttaaatttgaacattccat------tt |
16823143 |
T |
|
| Q |
413 |
taatttgtgtactatagggctggtgcttaagctgattttga |
453 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||| |
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| T |
16823142 |
taatttgtgaactataggactagtgcttaagctgattttga |
16823102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 442
Target Start/End: Complemental strand, 16968126 - 16968002
Alignment:
| Q |
318 |
ggatgaattggatgcagcccttagagaatcagaaatggtatctaaggtaaacctcctctttaagcacattt-aagttgaacttttcatattcattttaat |
416 |
Q |
| |
|
|||||||||||| || || ||||||||||| || | ||||| |||||| ||| ||||||| | |||||| || ||||||||| |||||| ||||||| |
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|
| T |
16968126 |
ggatgaattggagacaaccattagagaatcaaaagttgtatccaaggtactccttctctttaggaacatttaaatttgaactttgcatattaattttaa- |
16968028 |
T |
|
| Q |
417 |
ttgtgtactatagggctggtgcttaa |
442 |
Q |
| |
|
||||| |||||||| ||||||||||| |
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|
| T |
16968027 |
ttgtgaactataggactggtgcttaa |
16968002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 451
Target Start/End: Original strand, 10602609 - 10602754
Alignment:
| Q |
307 |
gaagtgctatgggatgaattggatgcagcccttagagaatcagaaatggtatctaaggtaaacctcctctttaagcacattt-aagttgaacttttcata |
405 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| ||||||||||| || ||||| | ||||| ||||| ||||||| |||||| || ||||||| | ||| |
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|
| T |
10602609 |
gaagtgttatgggatgaattagatacagttcttagagaatctgacgctgtatccatggtaatcctccactttaagaacatttaaatttgaactctgcatt |
10602708 |
T |
|
| Q |
406 |
ttcattttaatttgtgtactatagggctggtgcttaagctgatttt |
451 |
Q |
| |
|
|| ||||| ||||||| |||||||| || ||||| ||||| ||||| |
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| T |
10602709 |
tttatttttatttgtgaactataggactagtgctcaagcttatttt |
10602754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 594
Target Start/End: Complemental strand, 16976834 - 16976777
Alignment:
| Q |
537 |
gtgtaaatgttgctaaagtcgaattcaaatccaaagtcaaatacaatgccaaacctaa |
594 |
Q |
| |
|
|||||||| || | |||| | ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
16976834 |
gtgtaaattttaccaaagccaaattcaaatccaatgtcaaatacaatgccaaacctaa |
16976777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 16977930 - 16977863
Alignment:
| Q |
12 |
tagaaaagatttgaatgtggtggagaagttgattagagaggtgacggatagacaatgtggaatttctg |
79 |
Q |
| |
|
||||||| | ||||||||||| ||| | ||| |||||||||||| ||||| |||| |||||||||||| |
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|
| T |
16977930 |
tagaaaatacttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctg |
16977863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 16976915 - 16976860
Alignment:
| Q |
453 |
aacttaaattattcatttgttttaactttggttattcttcttcttcataccagaatgaa |
511 |
Q |
| |
|
||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||| |
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|
| T |
16976915 |
aacttaaattatttatatgtttaaactttgg---ttcttctttttcataccagaatgaa |
16976860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 16991466 - 16991422
Alignment:
| Q |
409 |
attttaatttgtgtactatagggctggtgcttaagctgattttga |
453 |
Q |
| |
|
||||||||||||| |||||||| || |||| |||||||||||||| |
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|
| T |
16991466 |
attttaatttgtgaactataggactagtgcataagctgattttga |
16991422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 16992142 - 16992046
Alignment:
| Q |
167 |
tgaatggagtatcagatgcgctgaaagtgaagagtgttgatgtggaagtgaaaaacgtctctgatgaaagcgtaaatgttgaagcgaatgccaaatc |
263 |
Q |
| |
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||||||||||| |||| | |||||| |||||||| || | | |||||||||| ||||||||||| | || |||||||||| |||||||||||| |
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| T |
16992142 |
tgaatggagtaccagagacactgaaacgaaagagtgtggaagggaaagtgaaaaatctctctgatgaatgtgtgaatgttgaagtgaatgccaaatc |
16992046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 35263166 - 35263233
Alignment:
| Q |
88 |
aatgagaatagtccatcttccataagtactgatgagttggaacatgcagatcttgctagtgtttcctc |
155 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
35263166 |
aatgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctc |
35263233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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