View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_11 (Length: 338)
Name: NF16414_low_11
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 24 - 320
Target Start/End: Complemental strand, 14783234 - 14782941
Alignment:
| Q |
24 |
atctctcaccatgaaccctaccaacaaagaagacacaattgacattgaagccattgatcatcaagaagaagaaacacaacaacatcaaaatcaaccatca |
123 |
Q |
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| T |
14783234 |
atctctcaccacgaaccctaccaacaatgaagacacaattgacattgaagccattgatcatcaagaagaa---acacaacaacatcaaaatcaaccatca |
14783138 |
T |
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| Q |
124 |
ccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactct |
223 |
Q |
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| T |
14783137 |
ccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactatctcttactct |
14783038 |
T |
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| Q |
224 |
ttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggctt |
320 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14783037 |
ttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggctt |
14782941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 14775227 - 14775077
Alignment:
| Q |
160 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
259 |
Q |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
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| Q |
260 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
310 |
Q |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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