View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16414_low_14 (Length: 305)

Name: NF16414_low_14
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16414_low_14
NF16414_low_14
[»] chr1 (1 HSPs)
chr1 (1-305)||(13397810-13398118)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 13398118 - 13397810
Alignment:
Q  1 tttaattcaaatcattaaatcatgatttgaatcattagtgcaaaaactgaaatgtaagttactataaagattgattcgaatcattaaaactttaatttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13398118 tttaattcaaatcattaaatcatgatttgaatcattagtgcaaaaactgaaatgtaagttactataaagattgattcgaatcattaaaactttaatttga 13398019  T
Q  101 atcattgatcctaggagaagatagatttgaatcatctctattttgatttgaatcagagaaaatgatatcaaaatgatttaaattaaattgtctttttgta 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13398018 atcattgatcctaggagaagatagatttgaatcatccctattttgatttgaatcagagaaaatgatatcaaaatgatttaaattaaattgtctttttgta 13397919  T
Q  201 aacaataattcgattcattttgtctttg----taaagatttgattcaaaccatcaaaagagaaacataaggatagaaaagtgcttagattcaaagaatgt 296  Q
    |||||||||| ||||||||||| |||||    ||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13397918 aacaataattagattcattttgcctttgtaattaaagatttgattcaattcatcaaaagagaaacataaggatagaaaaatgcttcgattcaaagaatgt 13397819  T
Q  297 ataccaatt 305  Q
    |||||||||    
T  13397818 ataccaatt 13397810  T

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