View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_15 (Length: 277)
Name: NF16414_low_15
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_15 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 34487694 - 34487453
Alignment:
| Q |
19 |
ttaaatcacacagataaagggaaggaattgggctttaggaccannnnnnncttgttgatgttttgtgagcttttgcatctctatgtatcagcgtaagaca |
118 |
Q |
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| T |
34487694 |
ttaaatcacacaaattaagggaaggaattgggctttaggaccatttttt-cttgttggtattttgtgagcttgtgcatctctatgtatcagtgtaacaca |
34487596 |
T |
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| Q |
119 |
tatttattttactgtattgctcttttattttaagagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatccat |
218 |
Q |
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| T |
34487595 |
tatttattttactgcattgctcttttattttatgagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatccat |
34487496 |
T |
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| Q |
219 |
tttgaacgtaa-agtatacactcgatcaagttgatctggatga |
260 |
Q |
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| T |
34487495 |
tttgaacgtaagagtatacactcgatcaagttgatctgaatga |
34487453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 27629267 - 27629042
Alignment:
| Q |
19 |
ttaaatcacacagataaagggaaggaattgggctttaggaccannnnnnn-cttgttgatgttttgtgagcttttgcatctctatgtatcagcgtaagac |
117 |
Q |
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| T |
27629267 |
ttaagtcacacaaataaagggaaggaattgggctttagcaccattttttttcttgttggtattttgtgagcttgtgcatccttatgtatcagtgtaagac |
27629168 |
T |
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| Q |
118 |
atatttattttactgtattgctcttttattttaagagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatcca |
217 |
Q |
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| T |
27629167 |
at--ttatttt-------tggtctttaattttaagagctgctttatatgccatgtaaaatggagttcttgtggtagaaataacttccttatgatgatcca |
27629077 |
T |
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| Q |
218 |
ttttgaacgtaa-agtatacactcgatcaagttga |
251 |
Q |
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| T |
27629076 |
ttttgaacgtaagagtggacactcgatcaagttga |
27629042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 34467976 - 34467878
Alignment:
| Q |
80 |
tttgtgagcttttgcatctctatgtatcagcgtaagacatatttattttactgtattgctcttttattttaagagctgctttgtatgccatgtataatg |
178 |
Q |
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| T |
34467976 |
tttgtgagtttgtgcatctgtatgtatcagtgtaagacatatttatttaactgtactgctcttttattttaagagctactttgtatgccaggtaaaatg |
34467878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 34521889 - 34521763
Alignment:
| Q |
24 |
tcacacagataaagggaaggaattgggctttaggaccannnnnnncttgttgatgttttgtgagcttttgcatctctatgtatcagcgtaagacatattt |
123 |
Q |
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| T |
34521889 |
tcacacaaataaagggaaggaattgggctttagcaccatttttttcttgttggtattttgtgagcttgtgcatctttatgtatcagtgtaagac--attt |
34521792 |
T |
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| Q |
124 |
attttactgtattgctcttttattttaagagctgct |
159 |
Q |
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| T |
34521791 |
attt-------ttgctcttttattttaagagctgct |
34521763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 34371772 - 34371859
Alignment:
| Q |
138 |
ctcttttattttaagagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatccattttgaac |
225 |
Q |
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| T |
34371772 |
ctcttttattttgagatgtactttgtatgtcatgcaaaatgaagttcttgtggtagaaataacttgctgatgttgatccattttgaac |
34371859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 1460 - 1371
Alignment:
| Q |
136 |
tgctcttttattttaagagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatccattttgaac |
225 |
Q |
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| T |
1460 |
tgctcttttattttgagatgtactttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatgctgatccattttgaac |
1371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 10527460 - 10527371
Alignment:
| Q |
136 |
tgctcttttattttaagagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatccattttgaac |
225 |
Q |
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| T |
10527460 |
tgctcttttattttgagatgtactttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatgctgatccattttgaac |
10527371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 10534272 - 10534183
Alignment:
| Q |
136 |
tgctcttttattttaagagctgctttgtatgccatgtataatggagttcttgtcgtagaaataacttccttatgatgatccattttgaac |
225 |
Q |
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| T |
10534272 |
tgctcttttattttgagatgtactttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatgctgatccattttgaac |
10534183 |
T |
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