View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_16 (Length: 266)
Name: NF16414_low_16
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 29983143 - 29983378
Alignment:
| Q |
11 |
catcatcacaaaccattaaatgatcaaccatcacatctttctcatctccaaaagactctatagcctcccaacttccatcatcaaattggaaggatggtat |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29983143 |
catcatcacaaaccattaaatgatcaaccatcacttctttctcatctccaaaagactctatagcctcccaacttccatcatcaaattggaaggatggtat |
29983242 |
T |
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| Q |
111 |
caaatccatatccacccattcaactccaaagtcatatccctcctccaccacttgttctatgttccatgattcatcatagtattcttcaaaattgctcttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29983243 |
caaatccatatccacccattcaactccaaagtcatatccctcctccaccacttgtcctatgttccatgattcatcatagtattcttcaaaattgctcttc |
29983342 |
T |
|
| Q |
211 |
aattgtgatcctatgcatgttgaattatcatggtca |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29983343 |
aattgtgatcctatgcatgttgaattatcatggtca |
29983378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 29978832 - 29979063
Alignment:
| Q |
11 |
catcatcacaaaccattaaatgatcaaccatcacatctttctcatctccaaaagactctatagcctcccaacttccatcatcaaattggaaggatggtat |
110 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
29978832 |
catcatcacaaaccattaaatgatcaagcatcacatctttctcatcttcaaaagagtctatagcctcccaatttccatcatcaaattggaaggatggcat |
29978931 |
T |
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| Q |
111 |
caaatccatatccacccattcaactccaaagtcatatccctcctccaccacttgttctatgttccatgattcatcatagtattcttcaaaattgctcttc |
210 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||| || ||||||||||||||| ||||||||||||||| ||||| |
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| T |
29978932 |
caaatccatatccacccattccaccccaaagtcatatccctcctccaccacatgtcctaggtgccatgattcatcataatattcttcaaaattgatcttc |
29979031 |
T |
|
| Q |
211 |
aattgtgatcctatgcatgttgaattatcatg |
242 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29979032 |
aattgtgatcctatgcatgttgaattatcatg |
29979063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 29992881 - 29993113
Alignment:
| Q |
11 |
catcatcacaaaccattaaatgatcaaccatcacatctttctcatctccaaaagactctatagcctcccaacttccatcatcaaattggaaggatggtat |
110 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |||| |||| || || || ||||||||||||||||||||||||||||||| || |
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| T |
29992881 |
catcatcacaaaccattaaatggtcaaccatcacatctttctcatgtccacaagattcaattgcttcccaacttccatcatcaaattggaaggatgtcat |
29992980 |
T |
|
| Q |
111 |
caaatccatatccacccattcaactccaaagtcatatccctcctccaccacttgttctatgttccatgattcatcatagtattcttcaaaattgctcttc |
210 |
Q |
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|||||||||||||||||| ||||| |||||||| | ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29992981 |
caaatccatatccacccactcaaccccaaagtcttgtccctcctccatcacttgtcctatgttccatgattcatcataatattcttcaaaattgctcttc |
29993080 |
T |
|
| Q |
211 |
aattgtgatcctatgcatgttgaattatcatgg |
243 |
Q |
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||||||||||||| |||||||||||| ||||| |
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| T |
29993081 |
aattgtgatcctaaacatgttgaattagcatgg |
29993113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 81 - 243
Target Start/End: Original strand, 29973314 - 29973479
Alignment:
| Q |
81 |
acttccatcatcaaattggaaggatggtatcaaatccatatccacccattcaactccaaagtcat---atccctcctccaccacttgttctatgttccat |
177 |
Q |
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|
|||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||| |
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| T |
29973314 |
acttccatcatcaaattgaaaggatgtcatcatatccatatccacccattcaactccaaagtcatgatatccctcctctaccacttgtccaatgttccat |
29973413 |
T |
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| Q |
178 |
gattcatcatagtattcttcaaaattgctcttcaattgtgatcctatgcatgttgaattatcatgg |
243 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29973414 |
gattcattataatattcttcaaaattgctcttcaattgtgatcctatgcatgttgaattatcatgg |
29973479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 29973259 - 29973307
Alignment:
| Q |
11 |
catcatcacaaaccattaaatgatcaaccatcacatctttctcatctcc |
59 |
Q |
| |
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||||||||| |||||| |||||||||| ||||||||| ||||||||||| |
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| T |
29973259 |
catcatcaccaaccataaaatgatcaatcatcacatccttctcatctcc |
29973307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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