View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_18 (Length: 239)
Name: NF16414_low_18
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 22794337 - 22794551
Alignment:
| Q |
19 |
actgaggggaccaaggagaagatgttacgtcccaatggattgcccgaatccttgattcgatatgatggtatatatgtaatattatatagtatgtctcttt |
118 |
Q |
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| T |
22794337 |
actgaggggaccaaggagaagatgttacgtcccaatggattgcccaaatccttgattcgatatgatgg----tatgtaatattatatagtatgtctcttt |
22794432 |
T |
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| Q |
119 |
cataaattaattaaataatttaatttgtatatatctaatatcactaaaatatttta--ttcatacaaaaacaatgtacatatattttaaaaaatcaatct |
216 |
Q |
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| T |
22794433 |
cata----aattaaataatttaatttgtatatatttaccatcactaaaatattttattttcatacaaaaacaatgtacatatattttaaaaaatcaatct |
22794528 |
T |
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| Q |
217 |
cttttttgaaattgtcatatttt |
239 |
Q |
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| T |
22794529 |
cttttttgaaattgtcatatttt |
22794551 |
T |
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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 40955915 - 40955975
Alignment:
| Q |
29 |
ccaaggagaagatgttacgtcccaatggattgcccgaatccttgattcgatatgatggtat |
89 |
Q |
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| T |
40955915 |
ccaaggagaagaatttacgtcccaatgggttgcctgaatccttgattcgatatgatggtat |
40955975 |
T |
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