View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_4 (Length: 446)
Name: NF16414_low_4
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 69 - 428
Target Start/End: Original strand, 402965 - 403314
Alignment:
| Q |
69 |
atcagaattttaagaaatcattggttgaaaaatcaaagagaaagaaatatttgatgtttggtttagttgagtctgacagataaattcatcttctgctcta |
168 |
Q |
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| T |
402965 |
atcagaattttaagaaatcattggttgaaaa-tcaaagagaaagaaatatttgatgtttggtttagttgagtctgaaagataaattcatcttctgctcta |
403063 |
T |
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| Q |
169 |
gaggattctatttcaataaatttgcaaataattaaataagctccttttttgaatataatccaaacacgaccaattgttcttcaattttcacttgattgta |
268 |
Q |
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| T |
403064 |
aaggattctatttcaataaatttgcaaataatttaataagctcgttt---------aatccaaacacgaccaattgttcttcaattttcacttgattgta |
403154 |
T |
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| Q |
269 |
tatgactttaaactaaaagaaaataaaatccctatagaggagccctcaaataagaaaaatgaatctttcaaaaagcacaaaacccaaataagtcttgctg |
368 |
Q |
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| T |
403155 |
tatgactttaaactaaaagaaaataaaatacctatagaggagccctcaaataagaaaattaaatcttttaaaaaccacaaaacccaaataagtcttgctg |
403254 |
T |
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| Q |
369 |
tgtatgttcaagcaacctcctaatctctctttttcgattcaacatcattgttagcacgag |
428 |
Q |
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| T |
403255 |
tgtatgttcaagcaacctcctaatctctctttttcgattcaacatcattgctagcacgag |
403314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 402869 - 402938
Alignment:
| Q |
1 |
ataacttgatggccgcctctttctgccttctgctttctcctctctctccctgcaagaaacatgaaagcat |
70 |
Q |
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| T |
402869 |
ataacttgatggccgcctctttctgccttctgctttctcttatctctccctgcaagaaacatgaaagcat |
402938 |
T |
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