View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16414_low_5 (Length: 427)

Name: NF16414_low_5
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16414_low_5
NF16414_low_5
[»] chr1 (14 HSPs)
chr1 (23-415)||(23627280-23627674)
chr1 (23-349)||(23617815-23618142)
chr1 (23-349)||(23649157-23649484)
chr1 (23-349)||(23734784-23735109)
chr1 (274-349)||(23741976-23742051)
chr1 (349-415)||(23627924-23627990)
chr1 (352-415)||(23617645-23617708)
chr1 (352-415)||(23648986-23649049)
chr1 (141-202)||(23617688-23617749)
chr1 (141-202)||(23649029-23649090)
chr1 (352-415)||(23734616-23734679)
chr1 (352-415)||(23741808-23741871)
chr1 (141-202)||(23734659-23734720)
chr1 (141-202)||(23741851-23741912)
[»] chr6 (11 HSPs)
chr6 (58-332)||(11841737-11842011)
chr6 (140-186)||(34106729-34106775)
chr6 (138-176)||(34135862-34135900)
chr6 (144-186)||(34168325-34168367)
chr6 (130-205)||(28711033-28711108)
chr6 (131-205)||(34119028-34119103)
chr6 (131-205)||(34146187-34146262)
chr6 (131-205)||(34158803-34158878)
chr6 (138-176)||(34138860-34138898)
chr6 (140-172)||(34091888-34091920)
chr6 (139-183)||(34114542-34114586)
[»] chr3 (4 HSPs)
chr3 (58-332)||(53287802-53288076)
chr3 (157-332)||(52805725-52805902)
chr3 (168-212)||(52545773-52545817)
chr3 (131-202)||(52805574-52805645)
[»] chr4 (2 HSPs)
chr4 (133-330)||(48430719-48430918)
chr4 (137-205)||(38648626-38648694)
[»] chr8 (1 HSPs)
chr8 (142-199)||(4382903-4382960)
[»] scaffold1113 (1 HSPs)
scaffold1113 (138-186)||(1838-1886)
[»] scaffold0961 (1 HSPs)
scaffold0961 (138-186)||(1731-1779)
[»] scaffold0620 (1 HSPs)
scaffold0620 (140-172)||(7222-7254)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 415
Target Start/End: Original strand, 23627280 - 23627674
Alignment:
Q  23 gaggtctcaaactccgagggttaaatcatctttaacttctatccataatctaccttaccaagaaacccaggcaagtcttttttgcaaatgttaccaaagt 122  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  23627280 gagggctcaaactccgagggttagatcatctttaacttctacccacaacctaccttaccaagaaacccaggcaagttttttctgcaaatgttaccaaagt 23627379  T
Q  123 ctacaagacctttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatttctaaacagcagcctg- 221  Q
     ||   ||||||| |||||||||||||||||||  ||| |||| | |||||||| |||||||||||||||||  ||||||||||||||||||||||  |     
T  23627380 ttatgggacctttagcaatgcttttgattcaagcatcacaattattgtttctttctgcatattttaaatcttcgatatcaatttctaaacagcagcgggg 23627479  T
Q  222 -ctgggagagaggggttgcttactatcctgactagagttatggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtatc 320  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  23627480 gctgggagagaggggttgcttactatcctgactagagttatggaggagactccttcagttccattcacacaggagttcattctagttctctttatgtatc 23627579  T
Q  321 atagtctttgcaacgtgcattttttgaagcctatttgaattctttaatatcagctgggtgcgaagctacggaaatgtaattttgggatcaatatt 415  Q
    ||||||||||||||||||||| ||  | |||||||||||||||||||||||||| | || ||||||||| |||||| ||||||||||||||||||    
T  23627580 atagtctttgcaacgtgcattattcaaggcctatttgaattctttaatatcagcagtgtacgaagctacagaaatggaattttgggatcaatatt 23627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 23618142 - 23617815
Alignment:
Q  23 gaggtctcaaactccgagggttaaatcatctttaacttctatccataatctaccttaccaagaaacccaggcaagtcttttttgcaaatgttaccaaagt 122  Q
    |||| |||||||| | ||||||| | ||||||||||||||| ||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  23618142 gagggctcaaacttcaagggttagaccatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagt 23618043  T
Q  123 ctacaagacctttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatttctaaacagcagcctgc 222  Q
     ||  || ||||| |||||||||||||||||||||||  |||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||  ||    
T  23618042 ttatgaggcctttagcaatgcttttgattcaagtttcgcaattatagtttc--tgtgcatattttaaatcttcaatatcaatttctaaacagcagcgggc 23617945  T
Q  223 tgggagagaggggttgcttactatcctgactagagttat---ggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtat 319  Q
    |||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||| || |||||||||| ||||| | |||||    
T  23617944 tgggagagaggggttgcttactatcctgactagagttatggaggaggagactccttcagttcgattcgcacaggaattcattctagctctctatgtgtat 23617845  T
Q  320 catagtctttgcaacgtgcattttttgaag 349  Q
    ||| |||||||||||||||||| |||||||    
T  23617844 cattgtctttgcaacgtgcattgtttgaag 23617815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 23649484 - 23649157
Alignment:
Q  23 gaggtctcaaactccgagggttaaatcatctttaacttctatccataatctaccttaccaagaaacccaggcaagtcttttttgcaaatgttaccaaagt 122  Q
    |||| |||||||| | ||||||| | ||||||||||||||| ||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  23649484 gagggctcaaacttcaagggttagaccatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagt 23649385  T
Q  123 ctacaagacctttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatttctaaacagcagcctgc 222  Q
     ||  || ||||| |||||||||||||||||||||||  |||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||  ||    
T  23649384 ttatgaggcctttagcaatgcttttgattcaagtttctcaattatagtttc--tgtgcatattttaaatcttcaatatcaatttctaaacagcagcgggc 23649287  T
Q  223 tgggagagaggggttgcttactatcctgactagagttat---ggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtat 319  Q
    |||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||| || |||||||||| ||||| | |||||    
T  23649286 tgggagagaggggttgcttactatcctgactagagttatggaggaggagactccttcagttcgattcgcacaggaattcattctagctctctatgtgtat 23649187  T
Q  320 catagtctttgcaacgtgcattttttgaag 349  Q
    ||| |||||||||||||||||| |||||||    
T  23649186 cattgtctttgcaacgtgcattgtttgaag 23649157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 23735109 - 23734784
Alignment:
Q  23 gaggtctcaaactccgagggttaaatcatctttaacttctatccataatctaccttaccaagaaacccaggcaagtcttttttgcaaatgttaccaaagt 122  Q
    |||| |||||||| ||||||||| ||||||||||||||||| ||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  23735109 gagggctcaaacttcgagggttagatcatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagt 23735010  T
Q  123 ctacaagacctttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatttctaaacagcagcctgc 222  Q
     |   || ||||| |||||||||||||||||||||||  |||| ||||||||  |||||||||||||||||  |||||||||||||||||||||||  ||    
T  23735009 ttg--aggcctttagcaatgcttttgattcaagtttcgcaattatagtttct--gtgcatattttaaatctgcaatatcaatttctaaacagcagcgggc 23734914  T
Q  223 tgggagagaggggttgcttactatcctgactagagttat---ggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtat 319  Q
    |||||||||||||||||||||||||||||||||||||||   ||| ||||||| |||||||||||||||||| || |||||||||| ||||| | |||||    
T  23734913 tgggagagaggggttgcttactatcctgactagagttatggaggaggagactcattcagttcgattcgcacaggaattcattctagctctctatgtgtat 23734814  T
Q  320 catagtctttgcaacgtgcattttttgaag 349  Q
    ||| |||||||||||||||||| |||||||    
T  23734813 cattgtctttgcaacgtgcattgtttgaag 23734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 23742051 - 23741976
Alignment:
Q  274 ttcagttcgattcgcacaagagttcattctagttctctttatgtatcatagtctttgcaacgtgcattttttgaag 349  Q
    |||||||||||||||||| || |||||||||| ||||| | |||||||| |||||||||||||||||| |||||||    
T  23742051 ttcagttcgattcgcacaggaattcattctagctctctatgtgtatcattgtctttgcaacgtgcattgtttgaag 23741976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 23627924 - 23627990
Alignment:
Q  349 gcctatttgaattctttaatatcagctgggtgcgaagctacggaaatgtaattttgggatcaatatt 415  Q
    |||||||||||||||||||||||||| | || ||||||||| |||||| ||||||||||||||||||    
T  23627924 gcctatttgaattctttaatatcagcagtgtacgaagctacagaaatggaattttgggatcaatatt 23627990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 23617708 - 23617645
Alignment:
Q  352 tatttgaattctttaatatcagctgggtgcgaagctacggaaatgtaattttgggatcaatatt 415  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||| |||| || ||||||||||    
T  23617708 tatttgaattctttaatatcagcagggtgcaaagctatggaaatggaattctgtgatcaatatt 23617645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 23649049 - 23648986
Alignment:
Q  352 tatttgaattctttaatatcagctgggtgcgaagctacggaaatgtaattttgggatcaatatt 415  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||| |||| || ||||||||||    
T  23649049 tatttgaattctttaatatcagcagggtgcaaagctatggaaatggaattctgtgatcaatatt 23648986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 23617749 - 23617688
Alignment:
Q  141 tgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatca 202  Q
    |||||||||||||||||||  ||||||||||||| | ||||||||| || ||||||||||||    
T  23617749 tgcttttgattcaagtttctcaattttagtttctatatgcatatttgaattctttaatatca 23617688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 23649090 - 23649029
Alignment:
Q  141 tgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatca 202  Q
    |||||||||||||||||||  ||||||||||||| | ||||||||| || ||||||||||||    
T  23649090 tgcttttgattcaagtttctcaattttagtttctatatgcatatttgaattctttaatatca 23649029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 23734679 - 23734616
Alignment:
Q  352 tatttgaattctttaatatcagctgggtgcgaagctacggaaatgtaattttgggatcaatatt 415  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||| |||| || || |||||||    
T  23734679 tatttgaattctttaatatcagcagggtgcaaagctatggaaatggaattgtgtgaccaatatt 23734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 23741871 - 23741808
Alignment:
Q  352 tatttgaattctttaatatcagctgggtgcgaagctacggaaatgtaattttgggatcaatatt 415  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||| |||| || || |||||||    
T  23741871 tatttgaattctttaatatcagcagggtgcaaagctatggaaatggaattgtgtgaccaatatt 23741808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 23734720 - 23734659
Alignment:
Q  141 tgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatca 202  Q
    ||||||||||| |||||||  |||||||||||||   ||||||||| || ||||||||||||    
T  23734720 tgcttttgatttaagtttctcaattttagtttctaaatgcatatttgaattctttaatatca 23734659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 23741912 - 23741851
Alignment:
Q  141 tgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatca 202  Q
    ||||||||||| |||||||  |||||||||||||   ||||||||| || ||||||||||||    
T  23741912 tgcttttgatttaagtttctcaattttagtttctaaatgcatatttgaattctttaatatca 23741851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 58 - 332
Target Start/End: Complemental strand, 11842011 - 11841737
Alignment:
Q  58 cttctatccataatctaccttaccaagaaacccaggcaagtcttttttgcaaatgttaccaaagtctacaagacctttggcaatgcttttgattcaagtt 157  Q
    |||||| ||| || |||||| | |||||||||||||||||| |||| ||||||||||||||| || ||   | || || |||||||||||||||| ||||    
T  11842011 cttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaatgtttatggggccgttagcaatgcttttgattctagtt 11841912  T
Q  158 tcagaattttagtttctttgtgcatattttaaatctttaatatcaatttctaaacagcagcctgctgggagagaggggttgcttactatcctgactagag 257  Q
    ||| |||| | |||||||||||||||||| |||||||||||| ||||||||||||||| |   ||||||| ||| |||||||||||||||||| ||||||    
T  11841911 tcacaattctcgtttctttgtgcatatttcaaatctttaataacaatttctaaacagctgggggctgggaaagaagggttgcttactatcctggctagag 11841812  T
Q  258 ttatggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtatcatagtctttgca 332  Q
    |||     ||||||||||| ||||||||||||||||| ||  |||||||||||||| |||||||| | |||||||    
T  11841811 ttaccagtgagactccttccgttcgattcgcacaagaatttgttctagttctctttttgtatcattgcctttgca 11841737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 34106729 - 34106775
Alignment:
Q  140 atgcttttgattcaagtttcagaattttagtttctttgtgcatattt 186  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||    
T  34106729 atgcttttgattcaagtttcagaattttagtttccttgttcatattt 34106775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 34135900 - 34135862
Alignment:
Q  138 caatgcttttgattcaagtttcagaattttagtttcttt 176  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  34135900 caatgcttttgattcaagtttcacaattttagtttcttt 34135862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 34168325 - 34168367
Alignment:
Q  144 ttttgattcaagtttcagaattttagtttctttgtgcatattt 186  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  34168325 ttttgattcaagtttcacaattttagtttctttgttcatattt 34168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 28711033 - 28711108
Alignment:
Q  130 acctttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatt 205  Q
    |||||| ||||| |||||||||||||||||| | || ||||||| |||| ||||||| |  |||||||||| ||||    
T  28711033 acctttagcaatacttttgattcaagtttcacacttctagtttccttgttcatatttgagttctttaatattaatt 28711108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 34119028 - 34119103
Alignment:
Q  131 cctttggcaatgcttttgattcaagtttcagaatttt-agtttctttgtgcatattttaaatctttaatatcaatt 205  Q
    ||||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||| |  |||||||||| ||||    
T  34119028 cctttagcaatgattttgattcaagtttcacaattttaattttctttgttcatatttgagttctttaatattaatt 34119103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 34146187 - 34146262
Alignment:
Q  131 cctttggcaatgcttttgattcaagtttcagaatttt-agtttctttgtgcatattttaaatctttaatatcaatt 205  Q
    ||||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||| |  |||||||||| ||||    
T  34146187 cctttagcaatgattttgattcaagtttcacaattttaattttctttgttcatatttgagttctttaatattaatt 34146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 34158803 - 34158878
Alignment:
Q  131 cctttggcaatgcttttgattcaagtttcagaatttt-agtttctttgtgcatattttaaatctttaatatcaatt 205  Q
    ||||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||| |  |||||||||| ||||    
T  34158803 cctttagcaatgattttgattcaagtttcacaattttaattttctttgttcatatttgagttctttaatattaatt 34158878  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 34138898 - 34138860
Alignment:
Q  138 caatgcttttgattcaagtttcagaattttagtttcttt 176  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  34138898 caatgcttttgattcaagtttcacagttttagtttcttt 34138860  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 34091888 - 34091920
Alignment:
Q  140 atgcttttgattcaagtttcagaattttagttt 172  Q
    ||||||||||||||||||||| |||||||||||    
T  34091888 atgcttttgattcaagtttcacaattttagttt 34091920  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 34114542 - 34114586
Alignment:
Q  139 aatgcttttgattcaagtttcagaattttagtttctttgtgcata 183  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  34114542 aatgtttttgtttcaagtttcacaattttagtttctttgttcata 34114586  T

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Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 58 - 332
Target Start/End: Original strand, 53287802 - 53288076
Alignment:
Q  58 cttctatccataatctaccttaccaagaaacccaggcaagtcttttttgcaaatgttaccaaagtctacaagacctttggcaatgcttttgattcaagtt 157  Q
    |||||| ||| || |||||| | |||||||||||||||||| |||| |||||||||||||||||| ||   | || || |||||||||||||||| ||||    
T  53287802 cttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttagcaatgcttttgattctagtt 53287901  T
Q  158 tcagaattttagtttctttgtgcatattttaaatctttaatatcaatttctaaacagcagcctgctgggagagaggggttgcttactatcctgactagag 257  Q
    ||| |||| | |||||||||||||||||| |||||||||||| ||||||||||||||| |   ||||||| ||| |||||||||||||||||| ||||||    
T  53287902 tcacaattctcgtttctttgtgcatatttcaaatctttaataacaatttctaaacagctgggggctgggaaagaagggttgcttactatcctggctagag 53288001  T
Q  258 ttatggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtatcatagtctttgca 332  Q
    |||     ||||||||||| | ||||||||||||||| ||  |||||||||||||| |||||||| | |||||||    
T  53288002 ttaccagtgagactccttccgctcgattcgcacaagaatttgttctagttctctttttgtatcattgcctttgca 53288076  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 157 - 332
Target Start/End: Complemental strand, 52805902 - 52805725
Alignment:
Q  157 ttcagaattttagtttctttgtgcatattttaaatctttaa--tatcaatttctaaacagcagcctgctgggagagaggggttgcttactatcctgacta 254  Q
    |||| |||||||||||||||||||||||||||| | |||||  ||||| |||||||||||||    ||||||||||||||||||||||||||||| ||||    
T  52805902 ttcacaattttagtttctttgtgcatattttaattgtttaaaatatcagtttctaaacagcaaggggctgggagagaggggttgcttactatcctaacta 52805803  T
Q  255 gagttatggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtatcatagtctttgca 332  Q
    |||||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||    
T  52805802 gagttatggaggagactccttccgttcgatttgcacaagaattccttctagttctctttctgtatcatagtctttgca 52805725  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 52545773 - 52545817
Alignment:
Q  168 agtttctttgtgcatattttaaatctttaatatcaatttctaaac 212  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  52545773 agtttctttgtgcatattctaattctttaatatcaatttctaaac 52545817  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 52805645 - 52805574
Alignment:
Q  131 cctttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatca 202  Q
    ||||| |||||||||||||||||||||| | ||| | |||||||   ||||||||| |||||||||||||||    
T  52805645 cctttagcaatgcttttgattcaagttttacaatataagtttctcgatgcatatttgaaatctttaatatca 52805574  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 330
Target Start/End: Complemental strand, 48430918 - 48430719
Alignment:
Q  133 tttggcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatttct--aaacagcagcctgctgggagag 230  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||| ||||| |||| |  || ||||||   ||||||||      
T  48430918 tttggcaatgcttttgattcaagtttcacaattttagtttctttatgcatatttttattctttgatatcgattttttaaaccagcaggtggctgggagta 48430819  T
Q  231 aggggttgcttactatcctgactagagttatggaagagactccttcagttcgattcgcacaagagttcattctagttctctttatgtatcatagtctttg 330  Q
    | |  ||||| ||||||||| ||||||||| ||| ||||  |||   ||||||||| || | || ||| |||||||||||||| | ||||||||||||||    
T  48430818 aagcattgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaattcgttctagttctctttctatatcatagtctttg 48430719  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 38648694 - 38648626
Alignment:
Q  137 gcaatgcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaatatcaatt 205  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||| ||||    
T  38648694 gcaatgcttttgattcaagtttcacaattttagtttctttgttcatatttgaattctttaatattaatt 38648626  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 4382903 - 4382960
Alignment:
Q  142 gcttttgattcaagtttcagaattttagtttctttgtgcatattttaaatctttaata 199  Q
    ||||||||| ||||||||| || || ||||||| ||||||||||| || |||||||||    
T  4382903 gcttttgatacaagtttcacaaattcagtttctatgtgcatatttgaattctttaata 4382960  T

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Target: scaffold1113 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 1886 - 1838
Alignment:
Q  138 caatgcttttgattcaagtttcagaattttagtttctttgtgcatattt 186  Q
    ||||| ||||||||||||||| | | ||||||||||||||| |||||||    
T  1886 caatgattttgattcaagttttacagttttagtttctttgttcatattt 1838  T

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Target: scaffold0961 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 1731 - 1779
Alignment:
Q  138 caatgcttttgattcaagtttcagaattttagtttctttgtgcatattt 186  Q
    ||||| ||||||||||||||| | | ||||||||||||||| |||||||    
T  1731 caatgattttgattcaagttttacagttttagtttctttgttcatattt 1779  T

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Target: scaffold0620 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 7222 - 7254
Alignment:
Q  140 atgcttttgattcaagtttcagaattttagttt 172  Q
    ||||||||||||||||||||| |||||||||||    
T  7222 atgcttttgattcaagtttcacaattttagttt 7254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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