View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16414_low_7 (Length: 395)
Name: NF16414_low_7
Description: NF16414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16414_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 25890651 - 25890901
Alignment:
| Q |
28 |
ttcacatagaagtgactatatttagttctatcttgcaaatgtatgatcatattatcatttatactagaattttaacatatgaattagttttaaccattct |
127 |
Q |
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| T |
25890651 |
ttcacatagaagtgactatatttagttctatcttgcaaatgtatgatcatattatcatttatactacaattttaacatatgagttagttttaaccattct |
25890750 |
T |
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| Q |
128 |
gtttgttcaggtatcaaacaattcatccttcttatcatggataatgcacatttgtaaattggcaccatgaaaaaattaacttttggtcagatgtgtggtt |
227 |
Q |
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| T |
25890751 |
gtttgttcaggtatcaaacaattcatccttcttatcatggataatgcacatttgtaaattggcaccatgaaaaaattaacttttggtcagatgtgtggtt |
25890850 |
T |
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| Q |
228 |
ttgaaagtctaacactagcttggttggcatagttgatagtatcaagtgttc |
278 |
Q |
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| T |
25890851 |
ttgaaagtctaacactagcttggttggcatagttgatagtatcaagtgttc |
25890901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 273 - 386
Target Start/End: Original strand, 25892032 - 25892145
Alignment:
| Q |
273 |
gtgttcccttcaatccaaagtgaaaaattgatttgttagtgattgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaataag |
372 |
Q |
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| T |
25892032 |
gtgttcccttcaatccaaagtgaaaaattgatttgttagcgattgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaataag |
25892131 |
T |
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| Q |
373 |
atcagtatattctt |
386 |
Q |
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| T |
25892132 |
atcagtatattctt |
25892145 |
T |
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