View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16415_high_4 (Length: 307)

Name: NF16415_high_4
Description: NF16415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16415_high_4
NF16415_high_4
[»] chr1 (11 HSPs)
chr1 (10-293)||(6521438-6521721)
chr1 (16-293)||(6512921-6513198)
chr1 (17-293)||(6507021-6507297)
chr1 (16-245)||(6517320-6517549)
chr1 (53-209)||(47713342-47713498)
chr1 (53-209)||(47745925-47746081)
chr1 (53-209)||(47718136-47718292)
chr1 (53-209)||(47760257-47760413)
chr1 (70-233)||(6500245-6500408)
chr1 (116-245)||(47777804-47777933)
chr1 (58-213)||(6523520-6523675)
[»] scaffold0341 (2 HSPs)
scaffold0341 (17-293)||(1046-1322)
scaffold0341 (17-293)||(8700-8976)
[»] chr7 (1 HSPs)
chr7 (10-101)||(722152-722242)
[»] chr5 (3 HSPs)
chr5 (58-210)||(28831400-28831552)
chr5 (121-209)||(28856659-28856747)
chr5 (121-209)||(28861936-28862024)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 6521721 - 6521438
Alignment:
Q  10 agaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6521721 agaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccat 6521622  T
Q  110 aagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  6521621 aagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgtttgttgggtagtt 6521522  T
Q  210 accaccatcgttattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaat 293  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521521 accaccatcattattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaat 6521438  T

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Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 6512921 - 6513198
Alignment:
Q  16 acagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagagg 115  Q
    |||| |||||| || | ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||  | ||||||||||    
T  6512921 acagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagagg 6513020  T
Q  116 aattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccacc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  6513021 aattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccacc 6513120  T
Q  216 atcgttattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaat 293  Q
    ||||||||||||||||||||||||||| ||||||||  || ||| | || | ||| ||||||||||||||||||||||    
T  6513121 atcgttattttgatcacagaagtattgcaatttgttatcattgttaatgttggctgtggtgagttgagatgtgaaaat 6513198  T

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Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 6507021 - 6507297
Alignment:
Q  17 cagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagagga 116  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| |||||   ||||||||||||    
T  6507021 cagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagagga 6507120  T
Q  117 attatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccacca 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  6507121 attatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccatca 6507220  T
Q  217 tcgttattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaat 293  Q
    ||||||  ||||||||| | |||| |||||||   || || ||||||||||||| || ||| |||||||||||||||    
T  6507221 tcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaat 6507297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 6517320 - 6517549
Alignment:
Q  16 acagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagagg 115  Q
    ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| ||||||||||| ||||||||||||||  ||||  ||||||||||||    
T  6517320 acagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagagg 6517419  T
Q  116 aattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccacc 215  Q
    | |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6517420 agttatagaaaccgtagttgatttctttgttggaagtgagaatggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagataccacc 6517519  T
Q  216 atcgttattttgatcacagaagtattggaa 245  Q
    ||||||||||||||||||||||||||||||    
T  6517520 atcgttattttgatcacagaagtattggaa 6517549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 47713342 - 47713498
Alignment:
Q  53 gtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagt 152  Q
    |||| ||||||||||| || |||||||| |||||||||||||| ||||| | |||||||||| |||| ||||||||||||||||| |   ||||||||||    
T  47713342 gtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagt 47713441  T
Q  153 gagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
    |||| |||||||||||||||| |||||  | || |||||||| |||| |||||||||    
T  47713442 gagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt 47713498  T

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Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 47745925 - 47746081
Alignment:
Q  53 gtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagt 152  Q
    |||| ||||||||||| || |||||||| ||||||||||| |||||||| | |||||||||| |||| ||||||||||||||||| |   ||||||||||    
T  47745925 gtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagt 47746024  T
Q  153 gagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
    |||| |||||||||||||||| |||||  | || |||||||| |||| |||||||||    
T  47746025 gagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt 47746081  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 47718136 - 47718292
Alignment:
Q  53 gtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagt 152  Q
    |||| ||||||||||| || || ||||  |||||||||||||||||||| | |||||||||| |||| ||||||||||||||||| ||| ||||||||||    
T  47718136 gtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagt 47718235  T
Q  153 gagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
     ||| |||| ||||||||| | |||||  | || |||||||| |||| |||||||||    
T  47718236 tagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagtt 47718292  T

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Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 47760257 - 47760413
Alignment:
Q  53 gtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagt 152  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||||| | |||||||||   ||| ||||||||||||||||| |||  |||||||||    
T  47760257 gtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgtagaaaccgtagttgatttctgcgttggaagt 47760356  T
Q  153 gagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
     ||| |||| |||| |||||| |||||  | || |||||||| |||| |||||||||    
T  47760357 tagattggacaaaacggtgttgaggttgttttgataggtgctattggctgtgtagtt 47760413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 6500245 - 6500408
Alignment:
Q  70 catagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaaggg 169  Q
    |||||||| |||||||  ||||||||  |||| | |||||  ||  |||| ||||||||||||||||| ||| |||||||||||||||| |||||||| |    
T  6500245 catagtccgatcgcgtagactttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtg 6500344  T
Q  170 tgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccaccatcgttattttgatcaca 233  Q
    |||| |||||| |||  |||||||| || |||||||||||||| | || ||| | |||||||||    
T  6500345 tgttgaggtttttgtcataggtgctatttgttgtgtagttacctctattgttgtcttgatcaca 6500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 47777933 - 47777804
Alignment:
Q  116 aattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccacc 215  Q
    |||| ||||||||||| ||||| | | |||||||| |||||||||||||||| ||||| |||||||| | |||||||||||| |||||||||||||| |     
T  47777933 aattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagttacctct 47777834  T
Q  216 atcgttattttgatcacagaagtattggaa 245  Q
     |||||  | ||||||||||| || |||||    
T  47777833 ctcgttgctgtgatcacagaaatagtggaa 47777804  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 213
Target Start/End: Complemental strand, 6523675 - 6523520
Alignment:
Q  58 acatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagag 157  Q
    ||||| ||||| || || ||||| |||||||||||||  ||||| |  || |  ||| |||| ||||||||||||||||| |   |||||||||||||||    
T  6523675 acatcgcctctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagag 6523576  T
Q  158 tggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttacca 213  Q
    |||| | ||| |  ||||||||||| |||||| | ||||||| ||||||| |||||    
T  6523575 tggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacca 6523520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 1046 - 1322
Alignment:
Q  17 cagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagagga 116  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| |||||   ||||||||||||    
T  1046 cagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagagga 1145  T
Q  117 attatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccacca 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  1146 attatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccatca 1245  T
Q  217 tcgttattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaat 293  Q
    ||||||  ||||||||| | |||| |||||||   || || ||||||||||||| || ||| |||||||||||||||    
T  1246 tcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaat 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 8700 - 8976
Alignment:
Q  17 cagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagagga 116  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| |||||   ||||||||||||    
T  8700 cagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagagga 8799  T
Q  117 attatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccacca 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  8800 attatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccatca 8899  T
Q  217 tcgttattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaat 293  Q
    ||||||  ||||||||| | |||| |||||||   || || ||||||||||||| || ||| |||||||||||||||    
T  8900 tcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaat 8976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 722242 - 722152
Alignment:
Q  10 agaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgtt 101  Q
    ||||| ||| |||||| |||| |||||||| ||||||||||||| || |||||||||||||||||||||| | ||||||||||  |||||||    
T  722242 agaaggacaattgaatatttgtggcaattt-gacaatcattgagcttaacatctcctctacatagtccaaccacgtttacttttacagtgtt 722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 28831400 - 28831552
Alignment:
Q  58 acatctcctctacatagtccaatcgcgtttactttgtcagtgttgttgccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagag 157  Q
    |||||||||||||||| ||| || |||| ||||||||   ||   ||||| || ||| | || |||||||||||| |||| ||| |||||||||| ||||    
T  28831400 acatctcctctacataatcctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagag 28831499  T
Q  158 tggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtta 210  Q
    | |||||||| ||||| ||||||   || || ||||||||  |||||||||||    
T  28831500 ttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagtta 28831552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 28856659 - 28856747
Alignment:
Q  121 tagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
    |||||||||||| |||| ||| |||||||||| ||||| |||||||| ||||| ||||||   || || ||||||||  ||||||||||    
T  28856659 tagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagtt 28856747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 28861936 - 28862024
Alignment:
Q  121 tagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagtt 209  Q
    |||||||||||| |||| ||| |||||||||| ||||| |||||||| ||||| ||||||   || || ||||||||  ||||||||||    
T  28861936 tagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagtt 28862024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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