View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16415_low_1 (Length: 548)
Name: NF16415_low_1
Description: NF16415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16415_low_1 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 279 - 530
Target Start/End: Original strand, 54619520 - 54619767
Alignment:
| Q |
279 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtttgttgtatgattcaacttatttcatctgcat |
378 |
Q |
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| T |
54619520 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtctgttgtatgattcaacttatttcatctgcat |
54619619 |
T |
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| Q |
379 |
tagtccaccctcaccttagattgagtattatctgaagcacaaagtcactgaaaactcactaaaaatatcttgggggttgtcttcattattcaaatccaaa |
478 |
Q |
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| T |
54619620 |
tagtccaccc----ctcagattgagtattatctgaagcacaaagtcactgaaaactcactaaaaatatcttgggggttgtcttcattattcaaatccaaa |
54619715 |
T |
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| Q |
479 |
tgattgcagaagtaataatagtcaaagtgtcaaactaaacataacactttgt |
530 |
Q |
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| T |
54619716 |
tgattgcagaagtaataatagtcaaagtgtcacactaaacataacactttgt |
54619767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 286
Target Start/End: Original strand, 54618868 - 54619120
Alignment:
| Q |
31 |
gaataaaagaatcataaatcgcaatacaatgaacacaatttttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatactta |
130 |
Q |
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| T |
54618868 |
gaataaaagaatcataaatcgcaatacaatgaacacaatctttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatactta |
54618967 |
T |
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| Q |
131 |
tgatctatattccaacaattttcatgctgaaccgtgaaagcgatagccctcgcaccccagtcgcctcctacaacaaccaattggacctaacacacgtttt |
230 |
Q |
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| T |
54618968 |
tgatctatattccaacaattttcatgctgaaccgtgacagcga---ccctcgcaccccagtcgcctcctacaacaaccaattggacctaacacacgtttt |
54619064 |
T |
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| Q |
231 |
ggccaaacacaagggcaggggcggagggagcttcactacaatagcttacctcccct |
286 |
Q |
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| T |
54619065 |
gaccaaacacaagggcaggggcagagggagcttcactgcaatagcttacctcccct |
54619120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 13951107 - 13951061
Alignment:
| Q |
216 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
262 |
Q |
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| T |
13951107 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
13951061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 3247 - 3201
Alignment:
| Q |
216 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
262 |
Q |
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| T |
3247 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
3201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 6938345 - 6938287
Alignment:
| Q |
208 |
caattggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttcac |
266 |
Q |
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| T |
6938345 |
caattgggactaacacacgtttgggccaaactcaagggcaggagcagagggagtttcac |
6938287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 39129349 - 39129296
Alignment:
| Q |
211 |
ttggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttc |
264 |
Q |
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| T |
39129349 |
ttgggcctaacacacgtttgacccaaacacaagggcatgggtggagggagcttc |
39129296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 2697854 - 2697802
Alignment:
| Q |
218 |
taacacacgttttggccaaacacaagggcaggggcggagggagcttcactaca |
270 |
Q |
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| T |
2697854 |
taacacatgtttgggccaaatgcaaggtcagggacggagggagcttcactaca |
2697802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 29663197 - 29663225
Alignment:
| Q |
240 |
caagggcaggggcggagggagcttcacta |
268 |
Q |
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| T |
29663197 |
caagggcaggggcggagggagcttcacta |
29663225 |
T |
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