View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16415_low_2 (Length: 538)
Name: NF16415_low_2
Description: NF16415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16415_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 25744992 - 25745504
Alignment:
| Q |
1 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaacttgaatgaaataatcacctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744992 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaacttgaatgaaataatcacctt |
25745091 |
T |
|
| Q |
101 |
gataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaattagatgctcttgccaat |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745092 |
gataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaattagatgctcttgccaat |
25745191 |
T |
|
| Q |
201 |
gaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactggtttaagtaata |
300 |
Q |
| |
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| ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25745192 |
g--------aatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatactggtttaagtaatg |
25745283 |
T |
|
| Q |
301 |
atgacttgaagcatacctgagaaagatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatggatattgccacaaacacagttg |
400 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25745284 |
atgacttgaagcatacctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgccacaaacacagttg |
25745383 |
T |
|
| Q |
401 |
gttgtgttctggacttgtactaaaaccatgaccacttaatatctctttgtaatgtctattccactgtaatccacaaacctgagctttggtatctatgctg |
500 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25745384 |
gttgtgttctggacttgtactaaagccatgaccacttaatatctctttgtaatgtctattccattgtaatccacaaacctgagctttggtatctatgctg |
25745483 |
T |
|
| Q |
501 |
caaatgttagttcctctttgt |
521 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
25745484 |
caaatgttggttcctctttgt |
25745504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 4349063 - 4348615
Alignment:
| Q |
1 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatgaaataatcacc |
98 |
Q |
| |
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||||||| ||||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || |
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| T |
4349063 |
agcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataatcccc |
4348964 |
T |
|
| Q |
99 |
ttgataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagctaaattagatgc |
190 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |||||||||| ||||| ||| ||||||||| |
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| T |
4348963 |
ttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaactatattagatgc |
4348864 |
T |
|
| Q |
191 |
tcttgccaatgaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactggt |
290 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4348863 |
tcttgccaatgaa--------tgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggt |
4348772 |
T |
|
| Q |
291 |
ttaagtaataatgacttgaagcatacctgagaaagatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatggatattgccaca |
390 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||| |
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| T |
4348771 |
ttaagtaattatgacttgaagcatacctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatggatattgccaca |
4348672 |
T |
|
| Q |
391 |
aacacagttggttgtgttctggacttgtactaaaacc---atgaccacttaatatct |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
4348671 |
aacacagttggttgtgttctggacttgtactaaagccatgatgaccacttaatatct |
4348615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 309 - 481
Target Start/End: Original strand, 18928523 - 18928709
Alignment:
| Q |
309 |
aagcatacctgagaaagatgaaggactctcga---agtatgagggtccaagcctccaactttagtcatagatgg-----------atattgccacaaaca |
394 |
Q |
| |
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|||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatgatggatattggcatattgccacaaaca |
18928622 |
T |
|
| Q |
395 |
cagttggttgtgttctggacttgtactaaaaccatgaccacttaatatctctttgtaatgtctattccactgtaatccacaaacctg |
481 |
Q |
| |
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||||||||| |||| |||| |||||||||| | |||||||||| |||||||||||| ||||||||||| ||||| ||||||||||| |
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|
| T |
18928623 |
cagttggttatgttttggatttgtactaaagctatgaccacttgatatctctttgtggtgtctattccattgtaaaccacaaacctg |
18928709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 483
Target Start/End: Original strand, 36840973 - 36841081
Alignment:
| Q |
375 |
gatggatattgccacaaacacagttggttgtgttctggacttgtactaaaaccatgaccacttaatatctctttgtaatgtctattccactgtaatccac |
474 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||| | ||||||||| ||||| |||| |
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| T |
36840973 |
gatggatattgccacaaacacagttggtaatgttttggatttgtactaaagtcatgaccacttaatatctctttatggcatctattccattgtaaaccac |
36841072 |
T |
|
| Q |
475 |
aaacctgag |
483 |
Q |
| |
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||||||||| |
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|
| T |
36841073 |
aaacctgag |
36841081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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