View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16415_low_4 (Length: 436)
Name: NF16415_low_4
Description: NF16415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16415_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 132 - 420
Target Start/End: Original strand, 14903146 - 14903439
Alignment:
| Q |
132 |
attttgctaaatgacgaaaatataaataaataacaaaacattccttcnnnnnnnnnnn-----cattagcaccaaaggtccttctgtcttgaggatcatc |
226 |
Q |
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| T |
14903146 |
attttgctaaatgatgaaaatataaataaataacaaaacattcctttaaaaaaaaaaaaaaaacattagcaccaaaggtccttctgtcttgaggatcatc |
14903245 |
T |
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| Q |
227 |
caaattcactttccacttgctttttccattttccattttctgaaattaccaacctttcagttttgggatcagttccatagtcctgcaagcagcagtagag |
326 |
Q |
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| T |
14903246 |
caaattcactttccacttgctttttccattttccattttctgaaattaccaacctttcagttttgggatcagttccacagtcctgcaagcagcagtagag |
14903345 |
T |
|
| Q |
327 |
gagtacaatttgttgttgcacctaaccacaagttttgacatcttcctctggtctaacaaagatcttaacctaatttgtgactataaatattaac |
420 |
Q |
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| T |
14903346 |
gagtacaatttgttgttgcacctaatcacaagttttgacatcttcctctggtctaacaaatatcttaacctaatttgtgactataaatattaac |
14903439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 17794913 - 17795051
Alignment:
| Q |
1 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacagcgtctctcaacagtagccttt |
100 |
Q |
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| T |
17794913 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacatcgtctctcaacagtagccttt |
17795012 |
T |
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| Q |
101 |
actatattgtcttcattgatgattttacaagattttgct |
139 |
Q |
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| T |
17795013 |
actatattgtcttcattgatgattttacaagattttgct |
17795051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 14879536 - 14879568
Alignment:
| Q |
339 |
ttgttgcacctaaccacaagttttgacatcttc |
371 |
Q |
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| T |
14879536 |
ttgttgcacccaaccacaagttttgacatcttc |
14879568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 26402424 - 26402562
Alignment:
| Q |
1 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacagcgtctctcaacagtagccttt |
100 |
Q |
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| T |
26402424 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacaccgtctctcaacagtagccttt |
26402523 |
T |
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| Q |
101 |
actatattgtcttcattgatgattttacaagattttgct |
139 |
Q |
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| T |
26402524 |
actatattgtcttcattgatgattttacaagattttgct |
26402562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 561917 - 561958
Alignment:
| Q |
326 |
ggagtacaatttgttgttgcacctaaccacaagttttgacat |
367 |
Q |
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| T |
561917 |
ggagtacaatttgttgtgtcacctaaccacaagttttgacat |
561958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1542791 - 1542929
Alignment:
| Q |
1 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacagcgtctctcaacagtagccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1542791 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacaccgtctctcaacagtagccttt |
1542890 |
T |
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| Q |
101 |
actatattgtcttcattgatgattttacaagattttgct |
139 |
Q |
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| T |
1542891 |
actatattgtcttcatcgatgattttacaagattttgct |
1542929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 7035493 - 7035631
Alignment:
| Q |
1 |
tcatttccaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacagcgtctctcaacagtagccttt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7035493 |
tcattttcaaaatcagcttggagagcaacacaaaagcttcagttaattcatactgatttatgtggaccacatagaacaccgtctctcaacagtagccttt |
7035592 |
T |
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| Q |
101 |
actatattgtcttcattgatgattttacaagattttgct |
139 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
7035593 |
actatattgtcttcattgatcattttacaagattttgct |
7035631 |
T |
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