View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_12 (Length: 353)
Name: NF16416_high_12
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_12 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 15885239 - 15884903
Alignment:
| Q |
10 |
gatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaacctcc |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |
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| T |
15885239 |
gatcaatacgtctatgcaacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaaggaaacagttcacctatgtcaaaacctcc |
15885140 |
T |
|
| Q |
110 |
tgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagccttcgaaaggatagcaaacgttgatgaaact |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||||| |
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| T |
15885139 |
agcaattgattctcccttccccaaagacgcgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaaggatagcaaatgtcgatgaaact |
15885040 |
T |
|
| Q |
210 |
acaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaactcacac |
309 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
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| T |
15885039 |
acaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctcttattggatggaatgaactcacat |
15884940 |
T |
|
| Q |
310 |
gtttttgtgataaaagctccattgtgcatattcttcg |
346 |
Q |
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||||||| |||||||||||||||||||||||| |||| |
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| T |
15884939 |
gtttttgcgataaaagctccattgtgcatatttttcg |
15884903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 346
Target Start/End: Original strand, 12610802 - 12611145
Alignment:
| Q |
3 |
agtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaa |
102 |
Q |
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||||| ||||||||| | |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| | |||| | ||||||| |
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| T |
12610802 |
agtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaaataattcagctatgtcaa |
12610901 |
T |
|
| Q |
103 |
aacctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagccttcgaaaggatagcaaacgttga |
202 |
Q |
| |
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|||||||||||||||||||||| | || | | | ||||||||| | |||||| |||| | |||||||||||||| | || ||||| ||| ||||| |
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| T |
12610902 |
aacctcctgcaattgattctccatctccaatagatccaaactcttctctgcctttgcctttgctgccaaacgcagcctttgtaatgatagaaaatgttga |
12611001 |
T |
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| Q |
203 |
tgaaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaa |
302 |
Q |
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|||||||||||| | ||| | |||| || || ||||| | ||| |||| |||| | ||||||| ||||| |||||||||||||||| | || ||| |
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| T |
12611002 |
tgaaactacaagctgagttatattgacgggcgacccttgttgcgaatcaatcttttttacgagattgttaagctcttcttctcttattggttgaaacgaa |
12611101 |
T |
|
| Q |
303 |
ctcacacgtttttgtgataaaagctccattgtgcatattcttcg |
346 |
Q |
| |
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|| ||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
12611102 |
ctaacacgcttttgtgtgaaaagctccattgtgcatatttttcg |
12611145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 12637804 - 12638145
Alignment:
| Q |
5 |
tatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaa |
104 |
Q |
| |
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|||| |||||||| |||||||||| ||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
12637804 |
tataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaa |
12637903 |
T |
|
| Q |
105 |
cctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagccttcgaaaggatagcaaacgttgatg |
204 |
Q |
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|||||| ||| ||||||||| || ||||| | ||| || ||||||| |||||||||||||||||||||||||| | | | |||| | |||||| |
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| T |
12637904 |
cctcctccaactgattctccatttgccaacgatacgagctgttcttggcctttgcatttgtttccaaacgcagcccttgtagtaatagtcataattgatg |
12638003 |
T |
|
| Q |
205 |
aaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaact |
304 |
Q |
| |
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|||||| || ||||| |||||||| ||| ||||| | ||| |||| ||||||||||||||||| | | ||||||||||||| ||| ||||||||| |
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| T |
12638004 |
taactacggcttgagtgatgttgatgggtgatccttgttgtgaatcaatacttttgatgagattggtgaactcttcttctcttataggccggaatgaact |
12638103 |
T |
|
| Q |
305 |
cacacgtttttgtgataaaagctccattgtgcatattcttcg |
346 |
Q |
| |
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||||||||||| | | ||| || |||||||||||| |||| |
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| T |
12638104 |
aacacgtttttgcgtaagaagttcaattgtgcatatttttcg |
12638145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 346
Target Start/End: Original strand, 62935 - 63278
Alignment:
| Q |
3 |
agtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaa |
102 |
Q |
| |
|
||||| ||||||| | ||||||||||||||| |||||||||||| | | | | ||||||||||||||| ||||||||||| | |||| || |||| |
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| T |
62935 |
agtatctgatcaagttgtctatgcaacctcttaagtttaggcctttgattaaatataagttgaagccatttggctgaaggaaataattcaattatttcaa |
63034 |
T |
|
| Q |
103 |
aacctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagccttcgaaaggatagcaaacgttga |
202 |
Q |
| |
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|||||||| |||||||| || || ||||| |||| |||| ||||||| |||||||||||| |||||||||||| | |||| ||||| || | ||| |
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| T |
63035 |
aacctcctccaattgatcctatatttcccaatgacgcaaactgttcttgggctttgcatttgtcgccaaacgcagcccttgaaatgatagaaatcattgt |
63134 |
T |
|
| Q |
203 |
tgaaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaa |
302 |
Q |
| |
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|| || |||||||||||||| ||||| | | ||||| | || |||| |||||||||||||||| ||| ||||||||||||||||| ||||||| |
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| T |
63135 |
tgtaagtacaagttcagtgatgttgacaggcaatccttgttgcaaatcaatccttttgatgagattggagagctcttcttctcttattggccggaatgaa |
63234 |
T |
|
| Q |
303 |
ctcacacgtttttgtgataaaagctccattgtgcatattcttcg |
346 |
Q |
| |
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| | ||| |||| | |||||||| |||||||||||| |||| |
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| T |
63235 |
ttgatacgactttgagtcaaaagctcaattgtgcatatttttcg |
63278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 23146706 - 23146811
Alignment:
| Q |
9 |
tgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaacctc |
108 |
Q |
| |
|
|||||| || ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||||||| ||||||| || || | ||||||||| | |
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| T |
23146706 |
tgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaacaaatctcccaagtcaaaacccc |
23146805 |
T |
|
| Q |
109 |
ctgcaa |
114 |
Q |
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|||||| |
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| T |
23146806 |
ctgcaa |
23146811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 23039831 - 23039909
Alignment:
| Q |
9 |
tgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaaca |
87 |
Q |
| |
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|||||| || ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||||||| ||||||| |
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| T |
23039831 |
tgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaaca |
23039909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 23033659 - 23033743
Alignment:
| Q |
31 |
tctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaacctcctgcaat |
115 |
Q |
| |
|
||||||| |||||||| | ||||| |||| ||||||||||||||| |||||||||| || || | || ||||||||||||||| |
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| T |
23033659 |
tctcaagcttaggcctaataccagtaacatgttgaagccatttagaagaaggaaacaaatctcccaagttaaaacctcctgcaat |
23033743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 5710 - 5626
Alignment:
| Q |
31 |
tctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaacctcctgcaat |
115 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||| ||||||||||| || ||||||| || || | |||||||||||||||||| |
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| T |
5710 |
tctcaagcttaggcctcaaaccagtaacttgttgtagccatttagcagatggaaacaaatctcccaagtcaaaacctcctgcaat |
5626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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