View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16416_high_14 (Length: 313)
Name: NF16416_high_14
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 45 - 309
Target Start/End: Complemental strand, 34550793 - 34550530
Alignment:
| Q |
45 |
attccttattgattatataatccatttacacacctgccaaatatgcagaaccaaattaaagggcagattaaaagacaaagtaaaagacnnnnnnntggaa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
34550793 |
attccttattgattatataatccatttacacacctgccaaatatgcagaaccaaattaaagggcagattcaa-gacaaagtaaaagacaaaaaaatggaa |
34550695 |
T |
|
| Q |
145 |
caagtcaatttcaaagtcattcatacacaaatnnnnnnnnttgtcaaagagtttacaacacttgaagttgaaaaaatcaaacttgttacaaattacaatg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34550694 |
caagtcaatttcaaagtcattcatacacaaataaaaaaaattgtcaaagagtttacaacacttgaagttgaaaaaatcaaacttgttacaaattacaatg |
34550595 |
T |
|
| Q |
245 |
acatcactgtgatgaaaattgaaataaacaaaacaacaaaacaagttggatcagaataatctacc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
34550594 |
acatcactgtgatgaaaattgaaataaacaaaacaacaaaacatgttggatcagaataatttacc |
34550530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University