View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_18 (Length: 280)
Name: NF16416_high_18
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 48300385 - 48300128
Alignment:
| Q |
18 |
tatttaatttctgttttttaaataagttattggttctgacttctgaataaacatgaatatggttcattcacatagggattaatagaagaactgggtatat |
117 |
Q |
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| T |
48300385 |
tatttaatttctcttttttaaataagttattggttctgacttctgaataaacatgaatatggttcattcacatagggattaatagaagaactgggtatat |
48300286 |
T |
|
| Q |
118 |
attttgtgcaatatgaccgagctggatacggagaaagtgatccaaacccgaaacgttcaatgaaaagtgaagcacttgacattcaagaacttgctgatca |
217 |
Q |
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| T |
48300285 |
attttgtgcaatatgaccgagctggatgcggagaaagtgatccaaacccgaaacgttcaatgaaaagtgaagcacttgacattcaagaacttgctgatca |
48300186 |
T |
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| Q |
218 |
gcttcaaattggagaacagttttatgtaattggaatctctatgggctcctatgctact |
275 |
Q |
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| T |
48300185 |
gcttcaaattggagaacagttttatgtaattggaatctctatgggctcctgtgctact |
48300128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 36299349 - 36299489
Alignment:
| Q |
18 |
tatttaatttctgttttttaaataagt--tattggttctgacttctgaataaacatgaatatggttcattcacatagggattaatagaagaactgggtat |
115 |
Q |
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|||||||||||||| || |||||| | ||||||||| || ||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
36299349 |
tatttaatttctgtgcttaaaataattcttattggttccgaattctgaataaagatgaatatggttgattcacataggaattaatagaagaactaggtat |
36299448 |
T |
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| Q |
116 |
atattttgtgcaatatgaccgagctggatacggagaaagtg |
156 |
Q |
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| T |
36299449 |
atattttgtgcaatatgactgagctggatatggagaaagtg |
36299489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 274
Target Start/End: Original strand, 36296036 - 36296236
Alignment:
| Q |
74 |
atatggttcattcacatagggattaatagaagaactgggtatatattttgtgcaatatgaccgagctggatacggagaaagtgatccaaacccgaaacgt |
173 |
Q |
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||||| || ||||||||||| ||| ||||| ||| | || || ||| || | |||||||| || |||||||| ||||| || |||||||| || |||||| |
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| T |
36296036 |
atatgattgattcacataggaattgatagatgaattaggaatttatcttctacaatatgatcgtgctggatatggagagagcgatccaaatcctaaacgt |
36296135 |
T |
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| Q |
174 |
tcaatgaaaagtgaagcacttgacattcaagaacttgctgatcagcttcaaattggagaacagttttatgtaattggaatctctatgggctcctatgcta |
273 |
Q |
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||| ||||||||||||||||||||||| ||||||| ||||||||| | ||||| |||| | | ||||||||||||||| |||| ||||| || ||||||| |
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| T |
36296136 |
tcactgaaaagtgaagcacttgacattgaagaactggctgatcagttgcaaatcggagcaaatttttatgtaattggagtctcaatgggttcatatgcta |
36296235 |
T |
|
| Q |
274 |
c |
274 |
Q |
| |
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| |
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| T |
36296236 |
c |
36296236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 19304232 - 19304129
Alignment:
| Q |
115 |
tatattttgtgcaatatgaccgagctggatacggagaaagtgatccaaacccgaaacgttcaatgaaaagtgaagcacttgacattcaagaacttgctga |
214 |
Q |
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||||| || |||| ||||| |||||||| || ||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||||||| ||||| |
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| T |
19304232 |
tatatattctgcattatgatcgagctggttatggacaaagtgatccaaatcccaaacgctcgctgaaaagtgaagcacttgacattgaagaactagctga |
19304133 |
T |
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| Q |
215 |
tcag |
218 |
Q |
| |
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|||| |
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|
| T |
19304132 |
tcag |
19304129 |
T |
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