View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16416_high_19 (Length: 278)
Name: NF16416_high_19
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 1903810 - 1904057
Alignment:
| Q |
11 |
gatgaatgagttgtgacacttgacaaatcagtcactggacgtaattaagcacttatttggattgtgtgtcatcttagtggttgttgatttttgatatcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
1903810 |
gatgaatgagttgtgacacttgacaaatcagtcactggacgtaattaaacacttatttgaattgtgtgtcatcttggtggttgttgacttttgatatcaa |
1903909 |
T |
|
| Q |
111 |
ttttgtgttgaaatatctatcatttctaaacaatttacacctcgtaatcgtaatttattgatgacacatttctcaccccaggcaattttcggaaagttga |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1903910 |
ttttgtgttgaaatatc----atttctaaacagtttgcacctcgtaatcgtaatttattgatgacaaatttctcaccccaggcaattttcggaaagttga |
1904005 |
T |
|
| Q |
211 |
taggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904006 |
taggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgt |
1904057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 1908043 - 1908290
Alignment:
| Q |
11 |
gatgaatgagttgtgacacttgacaaatcagtcactggacgtaattaagcacttatttggattgtgtgtcatcttagtggttgttgatttttgatatcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
1908043 |
gatgaatgagttgtgacacttgacaaatcagtcactggacgtaattaaacacttatttgaattgtgtgtcatcttggtggttgttgacttttgatatcaa |
1908142 |
T |
|
| Q |
111 |
ttttgtgttgaaatatctatcatttctaaacaatttacacctcgtaatcgtaatttattgatgacacatttctcaccccaggcaattttcggaaagttga |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1908143 |
ttttgtgttgaaatatc----atttctaaacagtttgcacctcgtaatcgtaatttattgatgacaaatttctcaccccaggcaattttcggaaagttga |
1908238 |
T |
|
| Q |
211 |
taggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1908239 |
taggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgt |
1908290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1898605 - 1898657
Alignment:
| Q |
25 |
gacacttgacaaatcagtcactggacgtaattaagcacttatttggattgtgt |
77 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
1898605 |
gacacttgataaatcagtcacgggacgtaattaagcacatatttgaattgtgt |
1898657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 1898780 - 1898852
Alignment:
| Q |
190 |
aggcaattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgt |
262 |
Q |
| |
|
|||| ||||| |||||||| ||||||| | |||||||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
1898780 |
aggctatttttggaaagtttataggcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgt |
1898852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University