View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_20 (Length: 272)
Name: NF16416_high_20
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 51936450 - 51936202
Alignment:
| Q |
15 |
aatataaacaatagttaaattttttggttaaaaacatttgacgcttagcatcgtttagcttcatcaaaatctcatgtttgaacatggacattaccatata |
114 |
Q |
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| T |
51936450 |
aatataaacaatagttaaattttttgattaaaaacatttgacgcttagcatcgtttagcttcatcaaaatctcatgtttgaacatggacattaccatata |
51936351 |
T |
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| Q |
115 |
ataatattgaaaatattaagagtttgtc--------gatcacatgataattaatagattaatcatacaatacttatagtagaagatattcatctaagaaa |
206 |
Q |
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| T |
51936350 |
ataatattaagaatattaagagtttgtcgtttatttgatcacatgataattaatagattaatcatacaatacttatcgtagaagatattcatctaagaaa |
51936251 |
T |
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| Q |
207 |
ttctagttgaatactataatcaactaagcttgtcactcgtatttgaact |
255 |
Q |
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| T |
51936250 |
ttctagttgaatactataatcaactaagcttgtcactcgtatttgaact |
51936202 |
T |
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