View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_22 (Length: 249)
Name: NF16416_high_22
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_22 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 747100 - 746855
Alignment:
| Q |
5 |
atggacatcatcaacacttacaaatgacatacaacatgtttctagttaatgacccaaatagagaaatacattgggatgatattgaaccatatgacattgt |
104 |
Q |
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| T |
747100 |
atggacataatcaacacttacaaatgacatacaacatgtttctagttaatgacccaaatagagaaatacattgtgatgatattgaaccatatgatattgt |
747001 |
T |
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| Q |
105 |
gtcgttaaatgttttcacacaaagtctagtgttgaacaacaaactataatttattgttagaaagtaaacagacatttatttaagtaaaacaattatatga |
204 |
Q |
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| T |
747000 |
gtcgttaaatgttttcacacaaagtctagtgttgaacaacaaactataatttattgttagaaagtaaacagacatttatttaagtaaaacaattatatga |
746901 |
T |
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| Q |
205 |
ctaaatatttgttccgtg-acataaacaaagataattttaattttt |
249 |
Q |
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| T |
746900 |
ctaaatatttgttccgtgaacataaacaaagataattttaattttt |
746855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 753589 - 753527
Alignment:
| Q |
37 |
aacatgtttctagttaatgacccaaatagagaaatacattgggatgatattgaaccatatgac |
99 |
Q |
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| T |
753589 |
aacatgcttctagttaattacccaaatagagaaatatattatggtaatatcgaaccatatgac |
753527 |
T |
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