View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_23 (Length: 235)
Name: NF16416_high_23
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 27545429 - 27545226
Alignment:
| Q |
15 |
ggtagaatacagaaattacacatatattcaaataatcttatgcatacagtttgagaaatatatatagacatggctggatatcttaattcttaacaagaga |
114 |
Q |
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| T |
27545429 |
ggtagaatacagaaattacacatatattcaaataatcttatgcatacagtttgagaaatatacatagacacggctggataccttaattcttaacaagaga |
27545330 |
T |
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| Q |
115 |
taaaatgacacaacaagcaataccaaatacaa----tgaagtcaatgaatctatctatatatcataagtaagtgagcaaaaagtattgagaaaaatcttt |
210 |
Q |
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| T |
27545329 |
taaaatgacacaacaagcaataccaaatacaatgaatgaagtcaatgaatctatctatatatcataagtaagtgagcaaaaagtattaagaaaaatcttt |
27545230 |
T |
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| Q |
211 |
ctag |
214 |
Q |
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|||| |
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| T |
27545229 |
ctag |
27545226 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 18642380 - 18642446
Alignment:
| Q |
141 |
atacaatgaagtcaatgaatctatctatatatcataagtaagtgagcaaaaagtattgagaaaaatc |
207 |
Q |
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|||||||||| |||||||||||||||||||| | ||| |||| |||||||||| || ||||||||| |
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| T |
18642380 |
atacaatgaaaccaatgaatctatctatatattagaagcaagtaagcaaaaagttttaagaaaaatc |
18642446 |
T |
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