View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_5 (Length: 537)
Name: NF16416_high_5
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_5 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Complemental strand, 21553 - 21065
Alignment:
| Q |
28 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
127 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21553 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
21454 |
T |
|
| Q |
128 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
227 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21453 |
ctgttatatctatatgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
21354 |
T |
|
| Q |
228 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatataaaagcacagtgtaacgcattcaagggatctcggctgttgat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21353 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatctaaaagcacagtgtaacgcattcaagggatctcggctgttgat |
21254 |
T |
|
| Q |
328 |
taagattttacgccttatattttgacttcacaaaa-tttctttaaaatgtaactcaaaatatgagtagttcaacgatcttcacctaacagcagagaatcc |
426 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21253 |
taagattttacgccttatattttgacttcacaaaattttctttaaaatgtaactcaaaatatgagtagttcaacgatcttcacctaacagcagagaatcc |
21154 |
T |
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| Q |
427 |
aattacctacaaataatactagagagtagagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaa |
515 |
Q |
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| T |
21153 |
aattacctacaaataatactagagagtagagatgaaatcgtatgttgtattcgaaatgaaaattacctcagcatctccttccatcctaa |
21065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Complemental strand, 27527672 - 27527184
Alignment:
| Q |
28 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
127 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27527672 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
27527573 |
T |
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| Q |
128 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
227 |
Q |
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| T |
27527572 |
ctgttatatctatatgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
27527473 |
T |
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| Q |
228 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatataaaagcacagtgtaacgcattcaagggatctcggctgttgat |
327 |
Q |
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| T |
27527472 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatctaaaagcacagtgtaacgcattcaagggatctcggctgttgat |
27527373 |
T |
|
| Q |
328 |
taagattttacgccttatattttgacttcacaaaa-tttctttaaaatgtaactcaaaatatgagtagttcaacgatcttcacctaacagcagagaatcc |
426 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527372 |
taagattttacgccttatattttgacttcacaaaattttctttaaaatgtaactcaaaatatgagtagttcaacgatcttcacctaacagcagagaatcc |
27527273 |
T |
|
| Q |
427 |
aattacctacaaataatactagagagtagagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaa |
515 |
Q |
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| T |
27527272 |
aattacctacaaataatactagagagtagagatgaaatcgtatgttgtattcgaaatgaaaattacctcagcatctccttccatcctaa |
27527184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 27533396 - 27533152
Alignment:
| Q |
28 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
127 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27533396 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
27533297 |
T |
|
| Q |
128 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
227 |
Q |
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| T |
27533296 |
ctgttatatctatatgcttctgagtgcctttattaagcaacacaacagctaccctatatcctgaaagaggacctgcccatatctatccaacaaaacatgc |
27533197 |
T |
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| Q |
228 |
agataagaacaaaaatctttaataaacatattgccaaattattag |
272 |
Q |
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| T |
27533196 |
agataagaacaaaaatctttaataaacatagtgccaaattattag |
27533152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 364 - 515
Target Start/End: Complemental strand, 27533101 - 27532957
Alignment:
| Q |
364 |
ttctttaaaatgtaactcaaaatatgagtagttcaacgatcttcacctaacagcagagaatccaattacctacaaataatactagagagtagagatgaaa |
463 |
Q |
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|||||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| | ||||| ||| || |||| |||| |
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| T |
27533101 |
ttctttaaaatgcaactcaaaacatgagtagtttgacgatcttcatttaacagaagacaatccaattccatacaagtaacgctcgagaa-------gaaa |
27533009 |
T |
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| Q |
464 |
tcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaa |
515 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27533008 |
tcgtatgttgtattcggaatgaaaattacctcagcatcaccttccatcctaa |
27532957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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