View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_high_6 (Length: 517)
Name: NF16416_high_6
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 25707690 - 25708190
Alignment:
| Q |
1 |
ttcagaccagatacatttgactttttagaannnnnnngcttatattttgttacagagagagcgagtaagtaataacagacgcagatgcagacacttacac |
100 |
Q |
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| T |
25707690 |
ttcagaccagatacatttgactttttagaattattttgcttatattttgttacagagagagcgagtaagtaataacagacgcagatgcaaacacttacac |
25707789 |
T |
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| Q |
101 |
aagccatattgaggatcaacttttgccaaacttgcataacctatactctgcaacattcaaatgaaaaattgaagaataatatgaatataaatgttgcttt |
200 |
Q |
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| T |
25707790 |
aagccatattgaggatcaacttttgccaaacttgcataacctatactctgcaacattcaaatgaaaaattgaagaataatatgaatataaatgttgcttt |
25707889 |
T |
|
| Q |
201 |
ttcacatgcaagacaaaaataatgtttcttagtacatacctgaggtatgcaaagacttgcaagagttaaaccagctaaaagatcatctttaaatttagag |
300 |
Q |
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| T |
25707890 |
ttcacatgcaagacaaaaataatgtttcttagtacatacctgaggtatgcaaagacttgcaagagttaaaccagctaaaagatcatctttaaatttagag |
25707989 |
T |
|
| Q |
301 |
atagtgtaatcttttaaccaaacaaggattggaaacaaactctgcaagaatgagtaagcaagtgcaagaaaacttttgttcttggatgagaaacataatt |
400 |
Q |
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| T |
25707990 |
atagtgtaatcttttaaccaaacaaggattggaaacaaactctgcaagaatgagtaagcaagtgcaagaaaacttttgttcttggatgagaaacataatt |
25708089 |
T |
|
| Q |
401 |
tgtttccatgaggcaaaagggtctctttcaatgaagaaaatagcttcttccataaaggtggtggattaggagaatccaaaacccacttagacctttctat |
500 |
Q |
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| T |
25708090 |
tgtttccatgaggcaaaagggtctctttcaatgaagaaaatagcttcttccataaaggtggtggattaggagaatccaaaacccacttagacctttctat |
25708189 |
T |
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| Q |
501 |
t |
501 |
Q |
| |
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| T |
25708190 |
t |
25708190 |
T |
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Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 33270914 - 33270975
Alignment:
| Q |
96 |
tacacaagccatattgaggatcaacttttgccaaacttgcataacctatactctgcaacatt |
157 |
Q |
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|||| ||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||| |
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| T |
33270914 |
tacataagccatattgaggatcaagttttgctaaattagcataaccaatactctgcaacatt |
33270975 |
T |
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