View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16416_high_9 (Length: 444)

Name: NF16416_high_9
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16416_high_9
NF16416_high_9
[»] chr7 (19 HSPs)
chr7 (230-429)||(32603124-32603323)
chr7 (15-112)||(32602869-32602966)
chr7 (158-209)||(30310115-30310166)
chr7 (156-207)||(33779153-33779204)
chr7 (155-205)||(43459453-43459503)
chr7 (155-205)||(30311537-30311587)
chr7 (155-206)||(40811337-40811388)
chr7 (155-206)||(47456443-47456494)
chr7 (157-207)||(6173520-6173570)
chr7 (155-205)||(32256463-32256513)
chr7 (155-207)||(32602929-32602981)
chr7 (164-208)||(32603073-32603117)
chr7 (155-190)||(3414902-3414937)
chr7 (155-205)||(4300116-4300166)
chr7 (232-330)||(32598532-32598630)
chr7 (158-204)||(40508377-40508423)
chr7 (155-205)||(47454335-47454385)
chr7 (158-207)||(33096865-33096914)
chr7 (72-112)||(33096862-33096902)
[»] chr4 (23 HSPs)
chr4 (301-416)||(31905965-31906080)
chr4 (150-205)||(4871427-4871482)
chr4 (155-209)||(24426333-24426387)
chr4 (155-203)||(42810271-42810319)
chr4 (155-210)||(4128986-4129041)
chr4 (155-205)||(390215-390265)
chr4 (155-205)||(1188841-1188891)
chr4 (160-206)||(15450148-15450194)
chr4 (158-206)||(2312553-2312601)
chr4 (155-207)||(6348151-6348203)
chr4 (155-214)||(1190260-1190318)
chr4 (155-202)||(27851000-27851047)
chr4 (67-110)||(49344095-49344138)
chr4 (155-205)||(44501516-44501566)
chr4 (155-205)||(44503746-44503796)
chr4 (155-204)||(1829752-1829801)
chr4 (157-205)||(1794409-1794457)
chr4 (158-206)||(1831334-1831382)
chr4 (155-207)||(2310919-2310971)
chr4 (76-112)||(2312565-2312601)
chr4 (155-207)||(7707584-7707636)
chr4 (155-207)||(10167421-10167473)
chr4 (76-112)||(15450158-15450194)
[»] chr2 (12 HSPs)
chr2 (155-202)||(36010578-36010625)
chr2 (155-205)||(17459251-17459301)
chr2 (155-205)||(32470643-32470693)
chr2 (155-206)||(43033079-43033130)
chr2 (157-207)||(6030540-6030590)
chr2 (155-206)||(6028742-6028793)
chr2 (155-206)||(11315930-11315981)
chr2 (155-205)||(11547657-11547707)
chr2 (157-206)||(32469145-32469194)
chr2 (155-203)||(28561368-28561416)
chr2 (155-207)||(28562877-28562929)
chr2 (78-110)||(36011726-36011758)
[»] chr3 (25 HSPs)
chr3 (155-208)||(40244182-40244235)
chr3 (155-206)||(37736149-37736200)
chr3 (157-204)||(34819354-34819401)
chr3 (155-205)||(12108051-12108101)
chr3 (73-110)||(37735300-37735337)
chr3 (155-207)||(37735302-37735354)
chr3 (155-202)||(18458725-18458772)
chr3 (75-112)||(40244183-40244220)
chr3 (157-206)||(53624431-53624480)
chr3 (157-209)||(8795934-8795986)
chr3 (155-207)||(50810902-50810954)
chr3 (155-207)||(50864910-50864962)
chr3 (155-206)||(36176575-36176626)
chr3 (155-206)||(38240903-38240954)
chr3 (157-204)||(55328375-55328422)
chr3 (155-200)||(18442255-18442300)
chr3 (155-200)||(19487329-19487374)
chr3 (155-208)||(40364314-40364367)
chr3 (157-206)||(53187556-53187605)
chr3 (155-207)||(3209999-3210051)
chr3 (155-207)||(18197143-18197195)
chr3 (157-209)||(35370907-35370959)
chr3 (76-112)||(38240903-38240939)
chr3 (155-207)||(50809417-50809469)
chr3 (155-207)||(50866393-50866445)
[»] chr1 (12 HSPs)
chr1 (155-207)||(34352024-34352076)
chr1 (155-206)||(45585077-45585128)
chr1 (155-207)||(15071338-15071390)
chr1 (155-206)||(14470853-14470904)
chr1 (155-206)||(52627512-52627563)
chr1 (155-211)||(24499723-24499779)
chr1 (155-207)||(46111556-46111608)
chr1 (155-205)||(52628941-52628991)
chr1 (155-207)||(15232748-15232800)
chr1 (153-209)||(16123281-16123337)
chr1 (154-206)||(23091348-23091400)
chr1 (68-112)||(46111571-46111615)
[»] chr6 (5 HSPs)
chr6 (155-206)||(6452579-6452630)
chr6 (155-205)||(232174-232224)
chr6 (155-204)||(7310275-7310324)
chr6 (76-112)||(6452594-6452630)
chr6 (78-110)||(7310275-7310307)
[»] chr5 (11 HSPs)
chr5 (155-206)||(30859240-30859291)
chr5 (155-205)||(22049204-22049254)
chr5 (155-206)||(22047729-22047780)
chr5 (155-204)||(41798015-41798064)
chr5 (155-207)||(22308867-22308919)
chr5 (155-206)||(325253-325304)
chr5 (157-208)||(39603848-39603899)
chr5 (155-205)||(30912230-30912280)
chr5 (153-205)||(22307506-22307558)
chr5 (155-207)||(30910737-30910789)
chr5 (155-207)||(34894145-34894197)
[»] scaffold0034 (1 HSPs)
scaffold0034 (150-208)||(109808-109866)
[»] chr8 (25 HSPs)
chr8 (155-205)||(32797136-32797186)
chr8 (155-205)||(45281256-45281306)
chr8 (155-207)||(32695343-32695395)
chr8 (155-202)||(41629709-41629756)
chr8 (158-209)||(42872260-42872311)
chr8 (155-207)||(6397779-6397831)
chr8 (155-207)||(28418802-28418854)
chr8 (155-207)||(32798600-32798652)
chr8 (155-186)||(211612-211643)
chr8 (158-205)||(212783-212830)
chr8 (158-205)||(239424-239471)
chr8 (155-186)||(240613-240644)
chr8 (155-186)||(725235-725266)
chr8 (158-205)||(726406-726453)
chr8 (158-205)||(792779-792826)
chr8 (155-186)||(793968-793999)
chr8 (158-205)||(798907-798954)
chr8 (150-205)||(8570116-8570171)
chr8 (155-206)||(28420242-28420293)
chr8 (155-212)||(13116321-13116378)
chr8 (71-112)||(32797130-32797171)
chr8 (157-205)||(12850465-12850513)
chr8 (155-207)||(26696528-26696580)
chr8 (72-112)||(28418799-28418839)
chr8 (155-207)||(42098559-42098611)
[»] scaffold0077 (2 HSPs)
scaffold0077 (155-207)||(54253-54305)
scaffold0077 (70-112)||(54268-54310)
[»] scaffold0031 (2 HSPs)
scaffold0031 (155-205)||(123967-124017)
scaffold0031 (155-204)||(125301-125350)
[»] scaffold0019 (1 HSPs)
scaffold0019 (155-187)||(61867-61899)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 230 - 429
Target Start/End: Original strand, 32603124 - 32603323
Alignment:
Q  230 atatacctgtttaacggggcaagtaaaatagtacttagcaccttccatctctcttctacagacaccagcaccacatttacacttaggatacttaaccaaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32603124 atatacctgtttaacggggcaagtaaaatagtacttagcaccttccatctctcttttacagacaccagcaccacatttacacttaggatacttaaccaaa 32603223  T
Q  330 gaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgcaccctagaaacaaaaacacatagtaaacaaaacttggtagtaat 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32603224 gaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgcaccctagaaacaaaaacacacagtaaacaaaacttggtagtaat 32603323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 32602869 - 32602966
Alignment:
Q  15 aaccctcatatggtactaaacaaacatgaaatacttcacaacacaaagaaccatataatttaggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32602869 aaccctcatgtggtactaaacaaacatgaaatacttcacaacacaaagaaccatataatttaggcttatttgatccattggtccttcaaataatttca 32602966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 30310166 - 30310115
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 209  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30310166 aaaatgaaaacttgaaattatttaagggactattggatcaaataagcctatt 30310115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 33779153 - 33779204
Alignment:
Q  156 ccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  33779153 ccaaaatgaaaacttgaaattatttaggggactaatggatcaaataagccta 33779204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 43459503 - 43459453
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  43459503 accaaaatgaaaacttgaaattatttaggggactaatggatcaaataagcc 43459453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 30311537 - 30311587
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  30311537 accaaaatgaaaatttgaaattatttaggggactaatggatcaaataagcc 30311587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 40811388 - 40811337
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  40811388 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 40811337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 47456443 - 47456494
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  47456443 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 47456494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 6173520 - 6173570
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||| ||||||||||| |||||| | |||||||||||||||||    
T  6173520 caaaatgaaaacttgaaattatttgagggaccattggatcaaataagccta 6173570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 32256463 - 32256513
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| ||||||||||| |||||| | |||||||||||||||    
T  32256463 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcc 32256513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 32602981 - 32602929
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||| ||||| ||||||||||| | |||| |||||||||||||||||||    
T  32602981 accaaaataaaaacttgaaattatttgaaggaccaatggatcaaataagccta 32602929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 32603073 - 32603117
Alignment:
Q  164 aaaacatgaaattatttaagggactaatggatcaaataagcctat 208  Q
    ||||||||||||||||||||| | | |||||||||||||||||||    
T  32603073 aaaacatgaaattatttaaggaaatgatggatcaaataagcctat 32603117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 3414902 - 3414937
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaa 190  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3414902 accaaaatgaaaacatgaaattatttaggggactaa 3414937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 4300116 - 4300166
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| |||||||||| | ||||| | |||||||||||||||    
T  4300116 accaaaatgaaaacttgaaattattcaggggacgattggatcaaataagcc 4300166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 32598532 - 32598630
Alignment:
Q  232 atacctgtttaacggggcaagtaaaatagtacttagcaccttccatctctcttctacagacaccagcaccacatttacacttaggatacttaaccaaag 330  Q
    |||||||||||| ||| ||| ||||||||  |||  | ||||||||| || ||| ||| || ||||||||||||| ||||  ||||||||||| |||||    
T  32598532 atacctgtttaatgggacaaataaaatagctctttcctccttccatcacttttccacaaactccagcaccacattgacacacaggatacttaaacaaag 32598630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 40508423 - 40508377
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    ||||||||||| |||||||||||| ||||| | ||||||||||||||    
T  40508423 aaaatgaaaacttgaaattatttaggggaccattggatcaaataagc 40508377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 47454385 - 47454335
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||| | ||||||||||| |||||| | |||||||||||||||    
T  47454385 accaaaatgaaagcttgaaattatttgagggaccactggatcaaataagcc 47454335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 33096914 - 33096865
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    ||||||| ||| ||||||||||| |||||| | |||||||||||||||||    
T  33096914 aaaatgagaacttgaaattatttgagggaccattggatcaaataagccta 33096865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 33096862 - 33096902
Alignment:
Q  72 atttaggcttatttgatccattggtcctttaaataatttca 112  Q
    |||||||||||||||||||| |||||| | |||||||||||    
T  33096862 atttaggcttatttgatccaatggtccctcaaataatttca 33096902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 301 - 416
Target Start/End: Original strand, 31905965 - 31906080
Alignment:
Q  301 cacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgcaccctagaaacaaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||  ||||||||    
T  31905965 cacatttacacttaggatacttaaccaaagaaggctccaaatccctctcatcatcacaccacttcacaaaagtactacaaggtgcaccctgaaaacaaaa 31906064  T
Q  401 acacatagtaaacaaa 416  Q
    ||||| ||||||||||    
T  31906065 acacacagtaaacaaa 31906080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 4871427 - 4871482
Alignment:
Q  150 gtagaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  4871427 gtagaaccaaaatgaaaacatgaaattattttggggaccaatggatcaaataagcc 4871482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 24426387 - 24426333
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 209  Q
    |||||||||||||| ||||||||||| |||||| | |||||||||||||||||||    
T  24426387 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcctatt 24426333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 42810271 - 42810319
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataag 203  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  42810271 accaaaatgaaaagttgaaattatttaagggactattggatcaaataag 42810319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 4129041 - 4128986
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatta 210  Q
    |||||||||||||| ||||||||||| ||| || | ||||||||||||||||||||    
T  4129041 accaaaatgaaaacttgaaattatttgaggaaccattggatcaaataagcctatta 4128986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 390265 - 390215
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| |||||||||||| ||||| |||| ||||||||||||    
T  390265 accaaaatgaaaacttgaaattatttaggggaccaatgaatcaaataagcc 390215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 1188891 - 1188841
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||| ||||| ||||||||||| |||||||| |||||||||||||||    
T  1188891 accaaaataaaaacttgaaattatttgagggactattggatcaaataagcc 1188841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 15450148 - 15450194
Alignment:
Q  160 aatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||    
T  15450148 aatgaaaacctgaaattatttaagggaccaatgaatcaaataagcct 15450194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 2312553 - 2312601
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||| |||| ||||||||| |||||||| ||||||||||||||||||    
T  2312553 aaaatggaaacttgaaattatctaagggaccaatggatcaaataagcct 2312601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 6348203 - 6348151
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| ||||||||||| |||||| | | |||||||||||||||    
T  6348203 accaaaatgaaaacttgaaattatttgagggaccatttgatcaaataagccta 6348151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 1190260 - 1190318
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctattaattt 214  Q
    |||||||||||||| | ||||||||| |||||| ||||| ||||||||||| ||||||||    
T  1190260 accaaaatgaaaacttaaaattatttgagggaccaatggttcaaataagcc-attaattt 1190318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 27851000 - 27851047
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 202  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||    
T  27851000 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataa 27851047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 49344138 - 49344095
Alignment:
Q  67 atataatttaggcttatttgatccattggtcctttaaataattt 110  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||    
T  49344138 atattatttaggcttatttgatccaatggtcctctaaataattt 49344095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 44501566 - 44501516
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||| ||||||||| ||||||||||| |||||| ||||| |||||||||||    
T  44501566 accagaatgaaaacttgaaattatttgagggaccaatggttcaaataagcc 44501516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 44503746 - 44503796
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||| ||||| ||||||||||| |||||||| || ||||||||||||    
T  44503746 accaaaataaaaacttgaaattatttgagggactattgaatcaaataagcc 44503796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 1829801 - 1829752
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    |||||||||||||| ||||||||||| ||||||   ||||||||||||||    
T  1829801 accaaaatgaaaacttgaaattatttgagggaccgttggatcaaataagc 1829752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 1794457 - 1794409
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||| ||||||||||| |||||| | || ||||||||||||    
T  1794457 caaaatgaaaacttgaaattatttgagggaccattgaatcaaataagcc 1794409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 1831334 - 1831382
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    ||||||||||| |||||||| || |||||| | ||||||||||||||||    
T  1831334 aaaatgaaaacttgaaattaattgagggaccattggatcaaataagcct 1831382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 2310971 - 2310919
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| |||||||| |||  |||| | |||||||||||||||||    
T  2310971 accaaaatgaaaacttgaaattaattagaggaccattggatcaaataagccta 2310919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 2312601 - 2312565
Alignment:
Q  76 aggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  2312601 aggcttatttgatccattggtcccttagataatttca 2312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 7707636 - 7707584
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||||||||||||  |||||||||||  |||| ||||| ||||    
T  7707636 accaaaatgaaaacatgaaattaaataagggactaaaagatctaataaaccta 7707584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 10167473 - 10167421
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  10167473 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagccta 10167421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 15450194 - 15450158
Alignment:
Q  76 aggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  15450194 aggcttatttgattcattggtcccttaaataatttca 15450158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 36010625 - 36010578
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36010625 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 36010578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 17459301 - 17459251
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17459301 accaaaatgaaaacttgaaattatttaagggactaatggatcaaataagcc 17459251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 32470643 - 32470693
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  32470643 accaaaataaaaacttgaaattatttaggggactaatggatcaaataagcc 32470693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 43033130 - 43033079
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| |||||||||||||||||  | ||||||||||||||||    
T  43033130 accaaaatgaaaacttgaaattatttaagggatcattggatcaaataagcct 43033079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 6030540 - 6030590
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||| | ||||||||| |||||||| |||||||||||||||||    
T  6030540 caaaatgaaaacttcaaattatttgagggactattggatcaaataagccta 6030590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 6028793 - 6028742
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||  |||||||||||| | ||| ||||||||||||||||||    
T  6028793 accaaaatgaaaatttgaaattatttaggagaccaatggatcaaataagcct 6028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 11315981 - 11315930
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| |||||||||||| ||||| |||| || ||||||||||    
T  11315981 accaaaatgaaaacttgaaattatttaggggaccaatgaattaaataagcct 11315930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 11547707 - 11547657
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| ||||||||||||| |||| |||  ||||||||||||    
T  11547707 accaaaatgaaaacttgaaattatttaaaggaccaataaatcaaataagcc 11547657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 32469194 - 32469145
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||| ||||||||||| |||||| | || |||||||||||||    
T  32469194 caaaatgaaaacttgaaattatttgagggaccattgaatcaaataagcct 32469145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 28561416 - 28561368
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataag 203  Q
    |||||||||||||| | |||||||||||||||| | || ||||||||||    
T  28561416 accaaaatgaaaacttaaaattatttaagggaccattgaatcaaataag 28561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 28562877 - 28562929
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  ||||||||||| |||||| | || ||||||||||||||    
T  28562877 accaaaatgaaaatttgaaattatttgagggaccattgaatcaaataagccta 28562929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 36011758 - 36011726
Alignment:
Q  78 gcttatttgatccattggtcctttaaataattt 110  Q
    ||||||||||||||||| |||||||||||||||    
T  36011758 gcttatttgatccattgatcctttaaataattt 36011726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 40244235 - 40244182
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 208  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  40244235 accaaaatgaaaacttgaaattatttaagggaccaatggatcaaataagcctat 40244182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 37736149 - 37736200
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  37736149 accaaaatgaaaacatgaaattatttaagggactaatgaatcacataagcct 37736200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 34819354 - 34819401
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  34819354 caaaatgaaaacttgaaattatttgagggactaatggatcaaataagc 34819401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 12108051 - 12108101
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  12108051 accaaaatgaaaacttgaaattatttaagggactattgaatcaaataagcc 12108101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 37735300 - 37735337
Alignment:
Q  73 tttaggcttatttgatccattggtcctttaaataattt 110  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37735300 tttaggcttatttgatccattggtcctttaaataattt 37735337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 37735354 - 37735302
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| | ||||||||||| |||| |||||||||||||||||||    
T  37735354 accaaaatgaaaacttaaaattatttaaaggaccaatggatcaaataagccta 37735302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 18458725 - 18458772
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 202  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  18458725 accaaaataaaaacttgaaattatttaggggactaatggatcaaataa 18458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 40244183 - 40244220
Alignment:
Q  75 taggcttatttgatccattggtcctttaaataatttca 112  Q
    |||||||||||||||||||||||| |||||||||||||    
T  40244183 taggcttatttgatccattggtcccttaaataatttca 40244220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 53624431 - 53624480
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  53624431 caaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 53624480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 8795986 - 8795934
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 209  Q
    |||||||||||| |||||||||||| ||||  |||||||| ||||||||||||    
T  8795986 caaaatgaaaacttgaaattatttaggggatcaatggatctaataagcctatt 8795934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 50810902 - 50810954
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||||    
T  50810902 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagccta 50810954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 50864962 - 50864910
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||||    
T  50864962 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagccta 50864910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 36176575 - 36176626
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    ||||||||||||||||||||||| | | ||||| | ||||||||||||||||    
T  36176575 accaaaatgaaaacatgaaattaatcaggggaccattggatcaaataagcct 36176626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 38240954 - 38240903
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||| ||||  |||||||||| ||||||| ||||||||||||||||||    
T  38240954 accaaaataaaaatttgaaattattcaagggaccaatggatcaaataagcct 38240903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 55328375 - 55328422
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    |||||||||||| |||||||| ||| | ||||||||||||||||||||    
T  55328375 caaaatgaaaacttgaaattaattaggagactaatggatcaaataagc 55328422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 18442300 - 18442255
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaat 200  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||    
T  18442300 accaaaatgaaaacttgaaattatttagaggaccaatggatcaaat 18442255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 19487374 - 19487329
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaat 200  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||    
T  19487374 accaaaatgaaaacttgaaattatttagaggaccaatggatcaaat 19487329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 40364367 - 40364314
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 208  Q
    |||||||||||||| |||||||||||| || || | | ||||||||||||||||    
T  40364367 accaaaatgaaaacttgaaattatttagggaaccattagatcaaataagcctat 40364314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 53187605 - 53187556
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||| |||||||||||| ||||| | | ||||||||||||||    
T  53187605 caaaatgaaaacttgaaattatttaggggaccattcgatcaaataagcct 53187556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 3209999 - 3210051
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  | |||||||||||||||| | || ||||||||||||||    
T  3209999 accaaaatgaaaatttaaaattatttaagggaccattgaatcaaataagccta 3210051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 18197195 - 18197143
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  ||||||||||| ||||||   |||||||||||||||||    
T  18197195 accaaaatgaaaatttgaaattatttgagggacatttggatcaaataagccta 18197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 35370959 - 35370907
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 209  Q
    |||||||||||||||||||||  |||||||| ||  |||| ||||||||||||    
T  35370959 caaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcctatt 35370907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 38240903 - 38240939
Alignment:
Q  76 aggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||||||||||||||||||||| || ||||||||||    
T  38240903 aggcttatttgatccattggtcccttgaataatttca 38240939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 50809469 - 50809417
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  |||||||||||||||||| ||| |||| | ||||||||    
T  50809469 accaaaatgaaaaattgaaattatttaagggaccaatagatctattaagccta 50809417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 50866393 - 50866445
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  |||||||||||||||||| ||| |||| | ||||||||    
T  50866393 accaaaatgaaaaattgaaattatttaagggaccaatagatctattaagccta 50866445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 34352024 - 34352076
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  34352024 accaaaatgaaaacttaaaattatttaagggactattggatcaaataagccta 34352076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 45585077 - 45585128
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  45585077 accaaaatgaaaacttgaaattatttgagggactattggatcaaataagcct 45585128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 15071390 - 15071338
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| |||||||||||| ||||| ||||||| |||||||||||    
T  15071390 accaaaatgaaaacttgaaattatttaggggaccaatggattaaataagccta 15071338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 14470904 - 14470853
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  14470904 accaaaatgaaaacttgaaattatttaggggaccattggatcaaataagcct 14470853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 52627563 - 52627512
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  52627563 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 52627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 24499723 - 24499779
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctattaa 211  Q
    |||||||||||||| |||||||||||| ||||| ||   ||||||||||||||||||    
T  24499723 accaaaatgaaaacttgaaattatttaggggaccaacaaatcaaataagcctattaa 24499779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 46111556 - 46111608
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||| ||||| |||||||||||||||||| | || ||||||||||||||    
T  46111556 accaaaataaaaacttgaaattatttaagggaccattgaatcaaataagccta 46111608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 52628941 - 52628991
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||| ||||| ||||||||||||||||||  || |||||||||||||    
T  52628941 accaaaattaaaacttgaaattatttaagggaccgatagatcaaataagcc 52628991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 15232800 - 15232748
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  15232800 accaaaatgaaaacatgaaattaaataagggaccaaatgatctaataagccta 15232748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 16123337 - 16123281
Alignment:
Q  153 gaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 209  Q
    |||||||||||||||| | ||||||||||  |||  |||| ||||||||||||||||    
T  16123337 gaaccaaaatgaaaactttaaattatttagaggatcaatgaatcaaataagcctatt 16123281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 23091400 - 23091348
Alignment:
Q  154 aaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    ||||||||||||||  |||||||| ||| ||||| ||| ||||||||||||||    
T  23091400 aaccaaaatgaaaatgtgaaattagttaggggaccaatagatcaaataagcct 23091348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 46111615 - 46111571
Alignment:
Q  68 tataatttaggcttatttgatccattggtcctttaaataatttca 112  Q
    |||| |||||||||||||||| || |||||| |||||||||||||    
T  46111615 tatattttaggcttatttgattcaatggtcccttaaataatttca 46111571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 6452579 - 6452630
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  6452579 accaaaatgaaaacttgaaattatttaggggaccaatggatcaaataagcct 6452630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 232224 - 232174
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||    
T  232224 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagcc 232174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 7310324 - 7310275
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    |||||||||||||| | ||||||||||| ||||  |||||||||||||||    
T  7310324 accaaaatgaaaacttaaaattatttaaaggaccgatggatcaaataagc 7310275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 6452630 - 6452594
Alignment:
Q  76 aggcttatttgatccattggtcctttaaataatttca 112  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6452630 aggcttatttgatccattggtcccctaaataatttca 6452594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 7310275 - 7310307
Alignment:
Q  78 gcttatttgatccattggtcctttaaataattt 110  Q
    ||||||||||||||| |||||||||||||||||    
T  7310275 gcttatttgatccatcggtcctttaaataattt 7310307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 30859240 - 30859291
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  30859240 accaaaatgaaaacttgaaattatttgagggactaatgaatcaaataagcct 30859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 22049204 - 22049254
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  22049204 accaaaatgaaaacttgaaattatttaggggactaatggttcaaataagcc 22049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 22047780 - 22047729
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||||||||    
T  22047780 accaaaatgaaaacttgaaattaattaagggaccattggatcaaataagcct 22047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 41798015 - 41798064
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    |||||||| ||||| ||||||||||| |||||| ||||||||||||||||    
T  41798015 accaaaataaaaacttgaaattatttgagggaccaatggatcaaataagc 41798064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 22308867 - 22308919
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    ||||||||||||||||||||||||||| ||||| ||  |||| ||||||||||    
T  22308867 accaaaatgaaaacatgaaattatttaggggaccaaacgatctaataagccta 22308919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 325253 - 325304
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||| ||||||||||| |||||| | | ||||||||||||||    
T  325253 accaaaatgaaaacttgaaattatttgagggaccattagatcaaataagcct 325304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 39603899 - 39603848
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 208  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||| ||||    
T  39603899 caaaatgaaaacttgaaattatttgagggatcaatggatcaaataagactat 39603848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 30912230 - 30912280
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||||||||||||  |||||||||||  |||| ||||||||    
T  30912230 accaaaatgaaaacatgaaattaaataagggactaaacgatctaataagcc 30912280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 22307558 - 22307506
Alignment:
Q  153 gaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||||||||||||| |||| ||||| ||  |||| ||||||||    
T  22307558 gaaccaaaatgaaaacatgaaattgtttaggggaccaaacgatctaataagcc 22307506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 30910789 - 30910737
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  30910789 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagccta 30910737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 34894197 - 34894145
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||   ||||||| ||||||||| |||||||| ||||||||||    
T  34894197 accaaaatgaaaaatggaaattaattaagggaccaatggatctaataagccta 34894145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 109808 - 109866
Alignment:
Q  150 gtagaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 208  Q
    |||| |||||||||||||| |||||||||||||||||| | || |||||||||||||||    
T  109808 gtaggaccaaaatgaaaacttgaaattatttaagggaccattgaatcaaataagcctat 109866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 32797186 - 32797136
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  32797186 accaaaatgaaaacttgaaattatttaagggaccaatagatcaaataagcc 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 45281256 - 45281306
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  45281256 accaaaatgaaaacttgaaattatttgagggactattggatcaaataagcc 45281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 32695343 - 32695395
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| ||||||||||| |||||| |||| ||||||||||||||    
T  32695343 accaaaatgaaaacttgaaattatttgagggaccaatgaatcaaataagccta 32695395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 41629756 - 41629709
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 202  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  41629756 accaaaataaaaacttgaaattatttaggggactaatggatcaaataa 41629709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 42872260 - 42872311
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 209  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||||||||    
T  42872260 aaaatgaaaacttaaaattatttaagggaccattggatcaaataagcctatt 42872311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 6397831 - 6397779
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    ||||||||||||| |||||||||||||   || ||||||||||||||||||||    
T  6397831 accaaaatgaaaatatgaaattatttagaagattaatggatcaaataagccta 6397779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 28418854 - 28418802
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||||    
T  28418854 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagccta 28418802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 32798600 - 32798652
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| ||||||||||| |||||| | || ||||||||||||||    
T  32798600 accaaaatgaaaacttgaaattatttgagggaccattgcatcaaataagccta 32798652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 186
Target Start/End: Complemental strand, 211643 - 211612
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaaggga 186  Q
    ||||||||||||||||||||||||||||||||    
T  211643 accaaaatgaaaacatgaaattatttaaggga 211612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 212783 - 212830
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  212783 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 212830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 239471 - 239424
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  239471 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 239424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 240613 - 240644
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaaggga 186  Q
    ||||||||||||||||||||||||||||||||    
T  240613 accaaaatgaaaacatgaaattatttaaggga 240644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 186
Target Start/End: Complemental strand, 725266 - 725235
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaaggga 186  Q
    ||||||||||||||||||||||||||||||||    
T  725266 accaaaatgaaaacatgaaattatttaaggga 725235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 726406 - 726453
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  726406 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 726453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 792826 - 792779
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  792826 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 793968 - 793999
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaaggga 186  Q
    ||||||||||||||||||||||||||||||||    
T  793968 accaaaatgaaaacatgaaattatttaaggga 793999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 798907 - 798954
Alignment:
Q  158 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  798907 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 798954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 8570171 - 8570116
Alignment:
Q  150 gtagaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||| |||||||||||||| |||||||| ||| ||||| | |||||||||||||||    
T  8570171 gtaggaccaaaatgaaaacgtgaaattaattaggggaccattggatcaaataagcc 8570116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 28420242 - 28420293
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 206  Q
    |||||||||||||  |||||||||||||||||| |||||||| | |||||||    
T  28420242 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagcct 28420293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 13116378 - 13116321
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctattaat 212  Q
    |||||||||||||||||||||||  |||||||| ||  |||| |||||||||| ||||    
T  13116378 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcctactaat 13116321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 32797130 - 32797171
Alignment:
Q  71 aatttaggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||| ||||||||||||| |||||||| |||||||||||||    
T  32797130 aattttggcttatttgatctattggtcccttaaataatttca 32797171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 12850465 - 12850513
Alignment:
Q  157 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||  ||||||||||| |||||| | |||||||||||||||    
T  12850465 caaaatgaaaatttgaaattatttgagggaccattggatcaaataagcc 12850513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 26696580 - 26696528
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||| |||||||| ||| ||||| | || ||||||||||||||    
T  26696580 accaaaatgaaaacttgaaattaattaggggaccattgaatcaaataagccta 26696528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 28418799 - 28418839
Alignment:
Q  72 atttaggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||||||||| | ||||||||||||| |||||||||||||    
T  28418799 atttaggcttaatagatccattggtcccttaaataatttca 28418839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 42098611 - 42098559
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  42098611 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagccta 42098559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 54253 - 54305
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 207  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||||||||||||    
T  54253 accaaaattaaaacttgaaattatttgagggaccaatggatcaaataagccta 54305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 54310 - 54268
Alignment:
Q  70 taatttaggcttatttgatccattggtcctttaaataatttca 112  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  54310 taatttaggcttatttgatccattggtccctcaaataatttca 54268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 124017 - 123967
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 205  Q
    |||||||||||||| ||||||||||| | |||| | |||||||||||||||    
T  124017 accaaaatgaaaacttgaaattatttgaaggaccattggatcaaataagcc 123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 125301 - 125350
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 204  Q
    |||||||||||||  ||||||||||| |||||| | ||||||||||||||    
T  125301 accaaaatgaaaatttgaaattatttgagggaccattggatcaaataagc 125350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 61899 - 61867
Alignment:
Q  155 accaaaatgaaaacatgaaattatttaagggac 187  Q
    ||||||||||||||||||||||||||| |||||    
T  61899 accaaaatgaaaacatgaaattatttaggggac 61867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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