View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_1 (Length: 759)
Name: NF16416_low_1
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 243 - 742
Target Start/End: Complemental strand, 17608495 - 17607996
Alignment:
| Q |
243 |
acctttctttgcgttcttgaatgtgtttcatctgagacttataatgactctcaatgaatttcttagcagcagcaaccctttccatggttaaggtggaaac |
342 |
Q |
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| T |
17608495 |
acctttctttgcgttcttgaatgtgtttcatttgagacttataatgactctcaatgaatttcttagcagcagcaaccctttccatggttaaggtggaaac |
17608396 |
T |
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| Q |
343 |
aacatcttcatcatcttcaccatcaccaatgggactaatctcatcatgttccaccacttcttcttcatctagcatttcctccttcaccatgtgattattc |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17608395 |
aacatcttcatcatcttcaccatcaccaatgggactaatctcatcatgttccaccacttcttcttcatctaccatttcctccttcaccatgtgattattc |
17608296 |
T |
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| Q |
443 |
tccatatcaaaatccaaaaccccttcctcctcttttctctcttttctcttccttagtttgaaatgattgtgacnnnnnnncaagagaagaacgtgaccct |
542 |
Q |
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| T |
17608295 |
tccataccaaaatccaaaaccccttcctcctcttttctctcttttctcttccttaatttgaaatgattgtgacaaaaaaacaagagaagaacgtgaccct |
17608196 |
T |
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| Q |
543 |
tctnnnnnnnncatacacatatgaagggtaaggagctatgtgtgagacaagtgttgaatgatggttggtttggtccttgtagcttggaacacaatcctat |
642 |
Q |
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| T |
17608195 |
tctaaaaaaaacatacacatatgaagggtaaggagctatgtgtgagacaagtgttgaatgatggttggtttggtccttgtagcttggaacacaatcctat |
17608096 |
T |
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| Q |
643 |
ggtttttaatgtcgatgaatccaaggtcatgaacaacatgggattgaattctttcacctttttcaaggaacatacgtaccataaactaattaatacactt |
742 |
Q |
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| T |
17608095 |
ggtttttaatgtcgatgaatccaaggtcatgaacaacatgggattgaattctttcacctttttcaaggaacatacgtaccataaactaattaatacactt |
17607996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 17608718 - 17608628
Alignment:
| Q |
17 |
aatatttcgggttcaatcaatgtgggtgnnnnnnncacggtttggagaggtggcaaaaccaggtgatacttcgcaccaataacatgattat |
107 |
Q |
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| T |
17608718 |
aatatttcgggttcaatcaatgtgggtgaaaaaaacacggtttggagaggtggcaaaaccaggtgatacttcgcaccaataacatgattat |
17608628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 17608603 - 17608542
Alignment:
| Q |
136 |
atttcacaaaaggaggtcatcaa-caacatgcaaagtgaaacaaacagatcttaaccaagac |
196 |
Q |
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| T |
17608603 |
atttcacaaaaggaggtcatcaaacaacatgcaaagtgaaacaaacagatcttaaccaagac |
17608542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 48256479 - 48256410
Alignment:
| Q |
243 |
acctttctttgcgttcttgaatgtgtttcatctgagacttataatgactctcaatgaatttcttagcagc |
312 |
Q |
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| T |
48256479 |
acctctctttccgatcttgaatatttttcatctgtgccctgtaatgattctcaatgaatttcttagcagc |
48256410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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