View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_10 (Length: 423)
Name: NF16416_low_10
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 12820797 - 12820597
Alignment:
| Q |
54 |
ttaaggggaaaattgtatataataattattctgggttttcaaaataagtgtatcaatcaattctatctgtcagacaagaaattggtctatcttccggatt |
153 |
Q |
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| T |
12820797 |
ttaagggaaaaattgtatataataattattctgggttttcaaaataagtgtatcaatcaattctatctgtcagacaagaaattggtctatcttccggatt |
12820698 |
T |
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| Q |
154 |
gaaaatgaaagagcgagagattcaagtggcctaacccacacaacattcgtagagttgggtctatgtaattatctcaacagattcagtccattcgaaaaac |
253 |
Q |
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| T |
12820697 |
gaaaatgaaagagcgagagattcaagtggcctaacccagacaacatacgtagagttgggtctatgtaattatctcaacagactcagtccattctaaaaac |
12820598 |
T |
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| Q |
254 |
a |
254 |
Q |
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| T |
12820597 |
a |
12820597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 254 - 423
Target Start/End: Complemental strand, 12819297 - 12819128
Alignment:
| Q |
254 |
aattagatttttagttaaaatattattaaaggcaaagagaatacaaacagggtaaaatggacgcggttggaccggactttgtaaggattaatcttgacca |
353 |
Q |
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| T |
12819297 |
aattagatttttagttaaaatattattaaatgcaaagagaatacaagcatgggaaaatggatgaggttggaccggactttgtaaggattaatcttaacca |
12819198 |
T |
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| Q |
354 |
ggttaaaaaattatagatttgagtatgatctattacccattatatgctaatttttaaggcctgatatatt |
423 |
Q |
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| T |
12819197 |
ggttaaaaaattatagatctgagcatgatctattacccattatatgctaatttttaaggcctgatatatt |
12819128 |
T |
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