View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_12 (Length: 368)
Name: NF16416_low_12
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 39281248 - 39280909
Alignment:
| Q |
19 |
aataaaagctgacatgcgtcattaaacaaaccctcgtagcagtacctactgattaatgtgttatacgtaacagcatcagggtgaattcctttggcttgta |
118 |
Q |
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| T |
39281248 |
aataaaagctgacatgcgtcattaaacaaaccctcgtagcagtacctactgatcaatgtgttatacgtaacagcatcagggtgaattcctttggcttgta |
39281149 |
T |
|
| Q |
119 |
gcccattaaaaaggttcaaagcctcctgcaaacggcccatcttgcaaagaccattgatcaagctgttataagtgactatatctggtgtcagaccacgctg |
218 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39281148 |
gcccgttaaaaaggttcaaagcctcctgaaaacggcccatcttgcaaagaccattgatcaggctgttataagtgactatatctggtgtcagaccacgctg |
39281049 |
T |
|
| Q |
219 |
aatcatatcccgaagaaattgaagagcgtcatttacttttccagtcctacagaaggaattgatcagaatattacaagagttgatactaggaaaaatttct |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39281048 |
aatcatatcccgaagaaactgaagagcgtcatttacttttccagtcctacagaaggaattgatcagaatattacaagagttaatactaggaaaaatttct |
39280949 |
T |
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| Q |
319 |
tcaccaaacatttgttcaatcaatcccaaacatttctctg |
358 |
Q |
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| T |
39280948 |
tcaccaaacatttgttcaatcaatcccaaacatttctctg |
39280909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 17348956 - 17349294
Alignment:
| Q |
19 |
aataaaagctgacatgcgtcattaaacaaaccctcgtagcagtacctactgattaatgtgttatacgtaacagcatcagggtgaattcctttggcttgta |
118 |
Q |
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||||||||| |||| || |||||||||||| |||| |||||| | |||||||| |||||||||||||||||||||| |||| ||||||| || ||||| |
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| T |
17348956 |
aataaaagcagacacgcatcattaaacaaatcctcatagcagaagctactgatcaatgtgttatacgtaacagcattagggcacattccttcggtttgta |
17349055 |
T |
|
| Q |
119 |
gcccattaaaaaggttcaaagcctcctgcaaacggcccatcttgcaaagaccattgatcaagctgttataagtgactatatctggtgtcagaccacgctg |
218 |
Q |
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||| ||||||||||||||||||||||| | ||| || | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |
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| T |
17349056 |
gcctgttaaaaaggttcaaagcctcctgaatacgaccatttttgcaaagaccattaatcaagctgttataagtgactatatctggtgtcaaaccacgatg |
17349155 |
T |
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| Q |
219 |
aatcatatcccgaagaaattgaagagcgtcatttacttttccagtcctacagaaggaattgatcagaatattacaagagttgatactaggaaaaatttct |
318 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |
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| T |
17349156 |
gatcatatctcgaagaaaccgaagagcgtcatttacttttccaatactacagaaggaattgctcagaatgttacaagagttaatactaggaaaaatccct |
17349255 |
T |
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| Q |
319 |
tcaccaaacatttgttcaatcaatcccaaacatttctct |
357 |
Q |
| |
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| |||||||||| |||||||||||||||| ||||||| |
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| T |
17349256 |
ttcccaaacatttcctcaatcaatcccaaacctttctct |
17349294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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