View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_18 (Length: 294)
Name: NF16416_low_18
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 42393428 - 42393712
Alignment:
| Q |
1 |
acatgcgtccgccccttcctatggtgatccctccatgattgcttgcctgcccgcggaaatctaatcaataaacgggttcagtgtgaagatatttgcattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42393428 |
acatgcgtccgccccttcctatggtgatccctccatgattgcttgcctacccgcggaaatctaatcaataaacgggttcagtgtgaagatatttgtattc |
42393527 |
T |
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| Q |
101 |
tatgtgattctgaacctgaagactgcaagcatgtttttcttatctgcccgatagcaaagcaatgttggggaaatcttcgcatattatagcaagcaatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393528 |
tatgtgattctgaacctgaagactgcaagcatgtttttcttatctgcccgatagcaaagcaatgttggggaaatcttcgcatattatagcaagcaatact |
42393627 |
T |
|
| Q |
201 |
ggaacatcccagtcctctgctgatgttttcttcaaaatcttgaaaaagatgctcgatgagggcagacgtctctttatgatgatgt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42393628 |
ggaacatcccagtcctctgctgatgttttcttcaaaatcttgaaaaagatgctcgatgaggacagacgtctctttatgatgatgt |
42393712 |
T |
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