View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_2 (Length: 742)
Name: NF16416_low_2
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 175 - 697
Target Start/End: Original strand, 41752532 - 41753049
Alignment:
| Q |
175 |
tttagaatcatattcatcttcatccgtgaaactcttattgtttatggttccactcataatagttgctggtctagtttctgtgttgggtcctaatccttct |
274 |
Q |
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| T |
41752532 |
tttagaatcatattcatcttcatccatgaaactcttattgtttatggttccactcataatagttgctggtctagtttccgtgttgggtcctaatccttct |
41752631 |
T |
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| Q |
275 |
aattggacttctattccaaactcaagtggtgatgatgttacaacaaaaactatggagaaggctcaacttgttgtggctgctgctgttgattttcataaca |
374 |
Q |
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| T |
41752632 |
aattggacttctattccaaacccaagtggtgatgatgttacaacaaaaactatggagaaggctcaagttgttgtggctgctgctgttgattttcataaca |
41752731 |
T |
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| Q |
375 |
aagaagtcaaagctatctctgatgattctcttttcaatctatcttctacacctccactttctattcaggcaatacctcaactattggtaagggagtaatg |
474 |
Q |
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| T |
41752732 |
aagaagtcaaagctatctctgatgattctcttttcaatctatcttctacacctccactttctattcaggcaatccctcaaatattggtaagggagtaatg |
41752831 |
T |
|
| Q |
475 |
ttttttctatctttaagtttggattttcctattnnnnnnnntttaattttacaggtggaatattaattacgtactgtggaaatttctttgttggaatttt |
574 |
Q |
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| T |
41752832 |
ttttttctatctttaagtttggattttcctattaaaaaaaa-ttaattttacaggtggaatattaat----tactgtggaaatttctttgttggaatttt |
41752926 |
T |
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| Q |
575 |
tcttaaaatatatgatttttgttgtatttacaaaggaaggaaagaatttattttacaggtggaatattagaaacttctctgctggaatttttcataaaat |
674 |
Q |
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| T |
41752927 |
tcttaaaatatatgatttttgttgtatttacaaaggaaggaaataatttattttacaggtggaatattagaaacttctctgctggaatttttcataaaat |
41753026 |
T |
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| Q |
675 |
attcgactattattgaaaaagga |
697 |
Q |
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| T |
41753027 |
attcgactattattgaaaaagga |
41753049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 41752364 - 41752477
Alignment:
| Q |
15 |
atatcacaccaatttattaccaagattcttcctataaatactatcccaccaaaaacttctctgttttaatcctcccctacttctactcttctctctttct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41752364 |
atatcacaccaatttattaccaagattcttcctataaatactatcccaccaaaaacttctctgttttaatcctcccctacttctactcttctctcttttt |
41752463 |
T |
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| Q |
115 |
taatttctcccacc |
128 |
Q |
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| T |
41752464 |
taatttctcccacc |
41752477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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