View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_22 (Length: 252)
Name: NF16416_low_22
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 43358849 - 43359059
Alignment:
| Q |
20 |
atacattcttgcgatacaaagtggtttgtttaatcaatgttaaaaacaaatatttactttcaactgaatttaaacatgtaattcaaaactgtccaaaacc |
119 |
Q |
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| T |
43358849 |
atacattcttgcgatacaaagtggtttgttaaatcaatgttaaaaacaaatatttactttcaactgaatttaaaaatgtaattcaaaactgtccaaaacc |
43358948 |
T |
|
| Q |
120 |
agcattgaaaattggtttaaaatccactttctacactaatgaaaccaataaccacatacctaaacatatgatatttttattttataaatttaagaacatg |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43358949 |
agaattgaaaattggtttaaaatccactttctacactaatgaaaccaataaccacatacctaaacatatgatatttttattttataaatttaagaagatg |
43359048 |
T |
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| Q |
220 |
gagaataacac |
230 |
Q |
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||||||||||| |
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| T |
43359049 |
gagaataacac |
43359059 |
T |
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