View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16416_low_27 (Length: 217)

Name: NF16416_low_27
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16416_low_27
NF16416_low_27
[»] chr7 (4 HSPs)
chr7 (23-179)||(18398749-18398906)
chr7 (44-118)||(18151950-18152024)
chr7 (31-130)||(6239185-6239281)
chr7 (38-113)||(32401781-32401855)
[»] chr4 (5 HSPs)
chr4 (23-118)||(27259096-27259191)
chr4 (32-130)||(21201942-21202039)
chr4 (29-132)||(2916476-2916579)
chr4 (23-118)||(35944929-35945024)
chr4 (92-132)||(40088574-40088614)
[»] chr2 (3 HSPs)
chr2 (51-129)||(14918217-14918295)
chr2 (31-129)||(42296174-42296268)
chr2 (133-177)||(33855815-33855859)
[»] chr3 (2 HSPs)
chr3 (18-107)||(896348-896437)
chr3 (136-191)||(3283675-3283731)
[»] chr1 (1 HSPs)
chr1 (28-132)||(52973671-52973773)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 18398906 - 18398749
Alignment:
Q  23 caaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttc 122  Q
    |||| |||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  18398906 caaagaactcaccttcatcctcaaagaattgtaatttctcttttgtaaactctaatcttatctaatgatttatgcaattatgtttttatcccttatcttc 18398807  T
Q  123 tctatttctaaggttcaactcaccataagttaaacc-atccttgtggtttagacatgg 179  Q
    || ||||||| | |||| |||||||| || ||||||  | ||| ||||||||||||||    
T  18398806 tccatttctacgattcagctcaccatgagctaaacctcttcttatggtttagacatgg 18398749  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 18151950 - 18152024
Alignment:
Q  44 caaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttat 118  Q
    |||||| |||||||||||||||  ||| ||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  18151950 caaaggattgtaatttctcttttataaactctaatcttatcaaatgatttatgcaattatgtctttatttcttat 18152024  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 6239185 - 6239281
Alignment:
Q  31 tcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctatttc 130  Q
    ||||||||||||||||||| || |||||| ||||  |||| ||||||||||||   | ||||||||||||||||||||||| |||||| ||||| |||||    
T  6239185 tcaccttcatcctcaaaggattttaatttatcttgtgtaaactctaatcttat---aagatttatgcaattatgtttttatatcttatcttctccatttc 6239281  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 32401781 - 32401855
Alignment:
Q  38 catcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatct 113  Q
    |||||||||||| |||||||| ||||||  ||| ||||| | |  | |||||||||||||||||||||||||||||    
T  32401781 catcctcaaaggattgtaatt-ctcttttataaactctactttattttaatgatttatgcaattatgtttttatct 32401855  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 27259191 - 27259096
Alignment:
Q  23 caaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttat 118  Q
    |||| ||| ||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  27259191 caaagaacccaccttcattctcaaaggattgtaatttctcttttgtaaactctaatcttatctaatgatttatgcaattttgtttttatctcttat 27259096  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 21202039 - 21201942
Alignment:
Q  32 caccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctatttc 130  Q
    |||||||||  ||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  21202039 caccttcattttcaaaggattg-aatttctcttttgtaaactctaatcttatctaatgatttatgcaattgtgtttttatctcttatcttctccatttc 21201942  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 2916579 - 2916476
Alignment:
Q  29 actcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctatt 128  Q
    |||||||||||| |||||||| || |||||||| |||  ||| |||||| ||||||||||| |||||||||| ||||||||||||||||| || || |||    
T  2916579 actcaccttcattctcaaaggattataatttcttttttataaactctaagcttatctaatggtttatgcaataatgtttttatctcttatattttccatt 2916480  T
Q  129 tcta 132  Q
    ||||    
T  2916479 tcta 2916476  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 35944929 - 35945024
Alignment:
Q  23 caaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttat 118  Q
    |||| ||||||| || ||||||  ||| ||||||||| ||||  || | |||||||||||| |||||||||| |||||||||||||||||||||||    
T  35944929 caaagaactcacatttatcctcggaggattgtaatttgtcttacgttaactctaatcttatttaatgatttaggcaattatgtttttatctcttat 35945024  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 40088614 - 40088574
Alignment:
Q  92 ttatgcaattatgtttttatctcttattttctctatttcta 132  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  40088614 ttatgcaattatgtttttatctcttatattttccatttcta 40088574  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 14918217 - 14918295
Alignment:
Q  51 ttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctattt 129  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14918217 ttgttatttctcttttgtaaactctaatcttatctaatgatttatgcaattatgtttttatctcttatcttctccattt 14918295  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 42296268 - 42296174
Alignment:
Q  31 tcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctattt 129  Q
    ||||||||||||||| | | ||||||||||||||| | || || ||||  ||    || ||||||||||||||||||||| || |||| ||||||||||    
T  42296268 tcaccttcatcctcagaagattgtaatttctcttttgcaaactataatagta----ataatttatgcaattatgtttttaactattatcttctctattt 42296174  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 33855859 - 33855815
Alignment:
Q  133 aggttcaactcaccataagttaaaccatccttgtggtttagacat 177  Q
    |||||||||||||||| || |||||| | ||||||||||||||||    
T  33855859 aggttcaactcaccatgagctaaacccttcttgtggtttagacat 33855815  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 896348 - 896437
Alignment:
Q  18 atctccaaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgttt 107  Q
    |||| |||| ||||||| |  ||||||||||| ||| ||||||||||| ||||  |||| ||||||||||||||||||||||||||||||    
T  896348 atctgcaaagaactcacatctatcctcaaaggattgaaatttctcttttgtaaattctattcttatctaatgatttatgcaattatgttt 896437  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 3283675 - 3283731
Alignment:
Q  136 ttcaactcaccataagttaaacca-tccttgtggtttagacatggtgacgctatgat 191  Q
    |||| |||||||| |||||||||  ||||||||||||||||||||||| | ||||||    
T  3283675 ttcagctcaccatgagttaaacccctccttgtggtttagacatggtgaggttatgat 3283731  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 52973773 - 52973671
Alignment:
Q  28 aactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctat 127  Q
    |||||||||||||||||||||| ||||||||||||||| |||  ||||| |||    ||||||| ||| || |||||||||| ||| |||| ||||| ||    
T  52973773 aactcaccttcatcctcaaaggattgtaatttctcttttgtagactctactct--cttaatgatatattcagttatgtttttgtcttttatcttctccat 52973676  T
Q  128 ttcta 132  Q
    |||||    
T  52973675 ttcta 52973671  T

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