View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16416_low_3 (Length: 618)
Name: NF16416_low_3
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Complemental strand, 32558009 - 32557421
Alignment:
| Q |
19 |
gttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggcatgcgtggctcacgtgctcgtaccaattttgtttaccat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32558009 |
gttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggcatgcgtggctcacgtgctcgtaccaattttgtttaccat |
32557910 |
T |
|
| Q |
119 |
gatacccctcctggttcttctgttactccaatcctctcacccgacnnnnnnnnnnnnnnnnnnn---ctcaaagtttttacgacctttcttttgttcttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32557909 |
gatacccctcctggttcttctgttactccaatcctctcacctgaccaacaacaacaacaacaacaacctcaaagtttttacgacctttcttttgttcttc |
32557810 |
T |
|
| Q |
216 |
aacctgaaccggttcctattcaacaaaacccggggttgtctatcgacccggtttcaatcataacttcctctgggagttacggttacggtgagggaaatga |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557809 |
aacctgaacccgttcctattcaacaaaacccggggttgtctatcgacccggtttcaatcataacttcctctgggagttacggttacggtgagggaaatga |
32557710 |
T |
|
| Q |
316 |
taataattatttcaataaatacagtcttcctcatcaagttcctcttgatacattggaggctagtattaataacattaataacaatggaaattcctatttt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32557709 |
taataattatttcaataaatacagtcttcctcatcaagttcctcttgatacattggaggctggtattaataacattaataataatggaaattcctatttt |
32557610 |
T |
|
| Q |
416 |
aacaacgacaatgttgagcttcctccgttgccaccggatattactagctctgcctgttatagtccaggtgattcagtattcaacggaggcgatcatggtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557609 |
aacaacgacaatgttgagcttcctccgttgccaccggatattactagctctgcctgttatagtccaggtgattcagtattcaacggaggcgatcatggtt |
32557510 |
T |
|
| Q |
516 |
atttttattcatcatgggagcagaatgcatcagaagactgttataataatcaaatgttgggaacaaatatgggaggtgcagagaataat |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557509 |
atttttattcatcatgggagcagaatgcatcagaagattgttataataatcaaatgttgggaacaaatatgggaggtgcagagaataat |
32557421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University