View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16416_low_4 (Length: 609)

Name: NF16416_low_4
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16416_low_4
NF16416_low_4
[»] chr4 (3 HSPs)
chr4 (91-590)||(33879195-33879691)
chr4 (99-148)||(33878620-33878669)
chr4 (15-69)||(33879128-33879182)
[»] scaffold0386 (2 HSPs)
scaffold0386 (15-164)||(676-825)
scaffold0386 (99-148)||(1284-1333)
[»] chr5 (5 HSPs)
chr5 (15-164)||(13869741-13869890)
chr5 (91-164)||(27641421-27641494)
chr5 (99-144)||(13869240-13869285)
chr5 (99-144)||(27640875-27640920)
chr5 (15-69)||(27641344-27641398)
[»] chr8 (3 HSPs)
chr8 (91-164)||(38460872-38460945)
chr8 (106-148)||(38460427-38460469)
chr8 (15-69)||(38460794-38460848)
[»] chr7 (3 HSPs)
chr7 (91-164)||(29735101-29735174)
chr7 (15-69)||(29735198-29735252)
chr7 (99-141)||(29735715-29735759)
[»] chr3 (3 HSPs)
chr3 (91-148)||(49850835-49850892)
chr3 (105-148)||(49851428-49851471)
chr3 (15-69)||(49850914-49850968)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 91 - 590
Target Start/End: Original strand, 33879195 - 33879691
Alignment:
Q  91 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctcatttactttagtcataaattgaaacc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879195 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctcatttactttagtcataaattgaaacc 33879294  T
Q  191 ggaaacatttcattataaattgaaactagaaaaatttcatattcaaaagagacttgagagaaacaaacttcaccataagaaaataaaacaagaagagatt 290  Q
     |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33879295 agaaacatttcattataaattgaaactagaaaaatttcatactcgaaagagacttgagagaaacaaacttcaccatatgaaaataaaacaagaagagatt 33879394  T
Q  291 tgaataattaaaaaataaccacgatcatgcatgcagttagttattaggtactctcgttcttccatcccaaagcttgtttgatcattgccattgctttctc 390  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33879395 tgaataattaaaaaataaccatgatcatgcatgcagttagttattaggtactctccttcttccatcccaaagcttgtttgatcattgccattgctttctc 33879494  T
Q  391 gcagattccactcccagcattgacttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactccttaaactttgtatacaaacgg 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879495 gcagattccactcccagcattgacttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactccttaaactttgtatacaaacgg 33879594  T
Q  491 cggtaagcactccgtaacgacacctgaaaagattccctaacctcaataaccgtcgaagaattgtcggtgttgctgctgctgctgtccatggtgttgtaac 590  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||   |||||||||||||||||||||||||||    
T  33879595 cggtaagcactccgtaacgacacctgaaaagactccctaacctcaataaccgtcgaagaattgtcgcggt---tgctgctgctgtccatggtgttgtaac 33879691  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 33878669 - 33878620
Alignment:
Q  99 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33878669 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 33878620  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 33879128 - 33879182
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttca 69  Q
    ||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  33879128 gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttca 33879182  T

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Target: scaffold0386 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 825 - 676
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttcannnnnnnnaaatnnnnnnnnntaatgatatgtcacgatttcattg 114  Q
    ||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||        ||||         ||||||||||||| ||||||||||    
T  825 gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcattttttttaaataaaaaaaaataatgatatgtcatgatttcattg 726  T
Q  115 gatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  725 gatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 676  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 1284 - 1333
Alignment:
Q  99 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 148  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  1284 tgtcatgattttattggatgtttgtaagtgtcacatgttatgtacgtttc 1333  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 13869741 - 13869890
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttcannnnnnnnaaatnnnnnnnnntaatgatatgtcacgatttcattg 114  Q
    ||||| |||||||||| | |||||||||||||| |||||||| ||||||||||||        ||||         ||||||||||||| ||||||||||    
T  13869741 gacatgatctataccacgatgcaaaaggatgacgatggttctgtttctattttcattttttttaaattaaaaaaaataatgatatgtcatgatttcattg 13869840  T
Q  115 gatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 164  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13869841 aatgtttgtaagtgccacatgttatgtacgtttctatgtaaaaatttctc 13869890  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 27641421 - 27641494
Alignment:
Q  91 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 164  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  27641421 taatgatatgtcatgatttcattgaatgtttgtaagtgccacatgatatgtacgtttctatgtaaaaatttctc 27641494  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 13869285 - 13869240
Alignment:
Q  99 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacg 144  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  13869285 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 13869240  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 27640920 - 27640875
Alignment:
Q  99 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacg 144  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27640920 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 27640875  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 27641344 - 27641398
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttca 69  Q
    ||||| |||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  27641344 gacatgatctataccacgatgcaaaaggatgacgatggttctgtttctattttca 27641398  T

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Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 38460872 - 38460945
Alignment:
Q  91 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 164  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38460872 taatgatatgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttctatgtaaaaatttctc 38460945  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 38460469 - 38460427
Alignment:
Q  106 atttcattggatgtttgtaagtgccacatgttatgtacgtttc 148  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38460469 atttcattggatgtttgtaagtgccacatgttatgtacgtttc 38460427  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 38460794 - 38460848
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttca 69  Q
    ||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  38460794 gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttca 38460848  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 29735174 - 29735101
Alignment:
Q  91 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 164  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  29735174 taatgatatgtcataattttattggatgtttgtaagtgccacatgttatgtaagtttctatgtaagaatttctc 29735101  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 29735252 - 29735198
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttca 69  Q
    ||||| |||||||||| | |||||||| ||||| |||||||| ||||||||||||    
T  29735252 gacatgatctataccacgatgcaaaagaatgacgatggttctgtttctattttca 29735198  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 29735715 - 29735759
Alignment:
Q  99 tgtcacgatttcattggat--gtttgtaagtgccacatgttatgt 141  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||    
T  29735715 tgtcatgatttcattggatatgtttgtaagtgccacatgttatgt 29735759  T

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Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 49850892 - 49850835
Alignment:
Q  91 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 148  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  49850892 taatgatatgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgtttc 49850835  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 49851428 - 49851471
Alignment:
Q  105 gatttcattggatgtttgtaagtgccacatgttatgtacgtttc 148  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  49851428 gatttcattggatgtttgtaagtgccacatgttatgtatgtttc 49851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 49850968 - 49850914
Alignment:
Q  15 gacatcatctataccaagttgcaaaaggatgacaatggttctatttctattttca 69  Q
    ||||| |||||||||| | |||||||||||||| |||||| | ||||||||||||    
T  49850968 gacatgatctataccacgatgcaaaaggatgacgatggttatgtttctattttca 49850914  T

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