View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_7 (Length: 471)
Name: NF16416_low_7
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 24145878 - 24146331
Alignment:
| Q |
1 |
aataattgtttccgtgccacaagatgaagctttaaagatcaaagtatgttcgtcaccaaaaagacaatggggagcaagttgggatgaacaattttccata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145878 |
aataattgtttccgtgccacaagatgaagctttaaagatcaaagtatgttcatcaccaaaaagacaatggggagcaagttgggatgaacaattttccata |
24145977 |
T |
|
| Q |
101 |
cttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatcacacaagttttatccactgcaatcatcttaggatcactctggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145978 |
cttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatcacacaagttttatccactgcaatcatcttaggatcactctggt |
24146077 |
T |
|
| Q |
201 |
ggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaaattgtttctataatcaaagaggaaatgtggttatactat-tttattaaagttact |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24146078 |
ggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaaattgtttctataatcaaagaggaaatgtggttatactatatttattaaagttact |
24146177 |
T |
|
| Q |
300 |
aaaaagcttgtgaaaataagttgaagacatattttaagctatttctataaattttgtcaaacacttaaggagactatttgggagaactaataaagctaag |
399 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24146178 |
aaaaagcttgtgaaaataagttgaagacatgtcttaagctatttctataaattttgtcaaacacttaaggagactatttgggagaactaataaagctaag |
24146277 |
T |
|
| Q |
400 |
tttaacatggtcatgagtagtttttagcttattttcataaactctcaaggatag |
453 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
24146278 |
tttaacatggtcataagtagtttttagcttatttccataaactctcaaggatag |
24146331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 59 - 246
Target Start/End: Original strand, 24128171 - 24128358
Alignment:
| Q |
59 |
aaaagacaatggggagcaagttgggatgaacaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatca |
158 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
24128171 |
aaaagacaatggggagcaagatgggatgaacaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatca |
24128270 |
T |
|
| Q |
159 |
cacaagttttatccactgcaatcatcttaggatcactctggtggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaaa |
246 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
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| T |
24128271 |
cacaagttttatccactgcaatcatcttaggattactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaaa |
24128358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 43531524 - 43531338
Alignment:
| Q |
59 |
aaaagacaatggggagcaagttgggatgaacaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatca |
158 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||| | |||| ||||||| |||| ||| ||| |||||||| ||||||||||| ||||||| |
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| T |
43531524 |
aaaagacaatggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatca |
43531425 |
T |
|
| Q |
159 |
cacaagttttatccactgcaatcatcttaggatcactctggtggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaa |
245 |
Q |
| |
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|||||||| | |||||||| ||||| | |||| ||| |||||||||||||||||| |||||||| | ||| ||||||||||||| |
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| T |
43531424 |
cacaagttctttccactgctgtcatccttggattactatggtggcaatcagatgctagcaacccaaagggtcttcaagatcaggtaa |
43531338 |
T |
|
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