View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16416_low_8 (Length: 468)
Name: NF16416_low_8
Description: NF16416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16416_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 42393008 - 42393450
Alignment:
| Q |
16 |
gcaagaacaataaaaacagtgtatatagtatatgtatgcatctaaatttattatgtattgtgagttttttaaataacatctggagatggttccaaaatta |
115 |
Q |
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| T |
42393008 |
gcaagaacaataaaaacagtgtgtatagtatatgtatgcatctaaatttattatgtattgtgagttttttaaataacatctggagatggttccaaaatta |
42393107 |
T |
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| Q |
116 |
acatttggaatgatccttagattcgccataccctcaccttctcgggttgacagtacacagtctgatgtcttctgatcttctctcttggaacaatgacacg |
215 |
Q |
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| T |
42393108 |
acatttggaatgatccttagattcgccataccctcaccttctcgggttgacagtacacagtctgatgtcttctgatcttctctcttggaacaatgacacg |
42393207 |
T |
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| Q |
216 |
aggagtgctagttttaatacttttgatgctgatgcaatttttcaaatgccgctttttagcagagatatcatggactgtcgtatctggaatgtgtcaagtg |
315 |
Q |
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| T |
42393208 |
aggagtgctagttttaatacttttgatgctgatgcaatttttcaaatgcctctttttagcagagatatcatggactgtcgtatctggaatgtgtcaagtg |
42393307 |
T |
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| Q |
316 |
atggaaaattttctgtcaagtcttcatacagcttacgtatgaagctaattgctaattgttgaacctgctcatgaattcattcaacgcaattggagtgtaa |
415 |
Q |
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| T |
42393308 |
atggaaaatattctgtcaagtcttcatacagcttacgtatgaggctaattgctaattgttgaacctgctcgtgaattcattcaacgcaattggagtgtaa |
42393407 |
T |
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| Q |
416 |
tttggaaactgcatattcctacatgcgtccgccccttcctatg |
458 |
Q |
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| T |
42393408 |
tttggaaactgcatattcctacatgcgtccgccccttcctatg |
42393450 |
T |
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