View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_high_1 (Length: 578)
Name: NF16417_high_1
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 11 - 562
Target Start/End: Complemental strand, 51457091 - 51456539
Alignment:
| Q |
11 |
cataggacaagcatgaacgactgcaactttatgactaacacatgccaattacactcaaaaaattggcttgaggctcacaagtcacaaccctaatgttgta |
110 |
Q |
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| T |
51457091 |
catatgacaagcatgaacgactgcgactttatgactaacacatgccaattacactcaaaaaattggcttgaggctcacaagtcacaaccctaatgttgta |
51456992 |
T |
|
| Q |
111 |
tttcttttaacatgtagaactacaaaccttgtaatcttatctcttcataacccaagagggtagaatgtctataaactaattttaacagaagaaccatcca |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51456991 |
tttcttttaacatgtagaactacaaaccttgtactcttatctcttcataacccaagagggtagaatgtctataaactaattttaacagaagaaccatcca |
51456892 |
T |
|
| Q |
211 |
tccaccaaaaaacaggtgtactgaaacttctatcaattccgaaaagatggagatgctaaattcaaaaaacatatatgaaatttaacagtaaaataacaaa |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51456891 |
tccaccaaaaaacaggtggactgaaacttctatcaattccgaaaagatggagatgctaaattcaaaaaacatatatgaaatttaacagtaaaataacaaa |
51456792 |
T |
|
| Q |
311 |
ctgctactgttaaagcactactagatgtcactttcaagcaaagtcattccagttaaaaaatatatgtttgataagagttccacattggatgagatatagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51456791 |
ctgctactgttaaagcactactagatgtcactttcaagcaaagtcattccagttaaaaaatatatgtttgataagagttccacattggatgagatatagc |
51456692 |
T |
|
| Q |
411 |
ctcaaactatgtttataaatgagatatacatctccccttacaaggcggttttgtaga-ttaagttaggtacaatccaaattttaagaacgtcggttaaat |
509 |
Q |
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| T |
51456691 |
ctcaaactatgtttataaatgagatatacatctccccttacaaggtggttttgtagagttaagttaggtacaatccaaattttaagaacgtcggttaaat |
51456592 |
T |
|
| Q |
510 |
aaattagaaacaagtttcacacaaggataataaacatgaattccagtaagaac |
562 |
Q |
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| T |
51456591 |
aaattagaaacaagtttcacacaaggataataaacatgaattccagtaagaac |
51456539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 51439640 - 51439607
Alignment:
| Q |
39 |
ttatgactaacacatgccaattacactcaaaaaa |
72 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
51439640 |
ttatgactaccacatgccaattacactcaaaaaa |
51439607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 43161507 - 43161455
Alignment:
| Q |
502 |
ggttaaataaattagaaacaagtttcacacaaggataataaacatgaattcca |
554 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
43161507 |
ggttaaataaattagaaacaagtatcacacaaagataataaacatgaattcca |
43161455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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