View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_high_3 (Length: 377)
Name: NF16417_high_3
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 40122861 - 40122502
Alignment:
| Q |
18 |
attaacctataaaatggataaacacctcaataagaggatccctgccaacaatggaaaacacttcctctgtcaannnnnnnaagacctttgccctgggatc |
117 |
Q |
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| T |
40122861 |
attaacctataaaatggataaacacctcaataagaggatccctgccaacaatggaaaacacttcctctgtcaatttttttaagacctttgccctgggatc |
40122762 |
T |
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| Q |
118 |
atagtttttgtaaactcgatgtccaaaaccagagagctttcgtttcctggagaacaatacaggacaagaaagtcaaataaaactatcatttttgtgaaga |
217 |
Q |
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| T |
40122761 |
atagtttttgtaaactcgatgtccaaaaccagagagctttcgtttcctggagaacaatacaggacaagaaagtcaaataaaactatcatttttgtgaaga |
40122662 |
T |
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| Q |
218 |
aacccccaaaagaggcaacaagagcaacggatgacgctgtccataacaaatcgagaaaaagtagtagacccaaataacaaagagaaagtaacagctacct |
317 |
Q |
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| T |
40122661 |
aacccccaaaagaggcaacaagagcaacggatgacgctgtccataacaaatcgagaaaaagtagtagacccaaataacaaagagaaagtaacagctacct |
40122562 |
T |
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| Q |
318 |
ggttttgacaccttcaatgaattctggaatgttctcaacagttctgatttcacttagcat |
377 |
Q |
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| T |
40122561 |
ggttttgacaccttcaatgaattctggaatgttctcaacagttctgatttcacttagcat |
40122502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 18173913 - 18173773
Alignment:
| Q |
31 |
atggataaacacctcaataagaggatccctgccaacaatggaaaacacttcctctgtcaannnnnnnaagacctttgccctgggatcatagtttttgtaa |
130 |
Q |
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| T |
18173913 |
atggataaacacctcaatcaaaggatcccggccaacaatagaaaacacttcctcggtcaatttttttaagacctttgctctaggatcgtagtttttgtag |
18173814 |
T |
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| Q |
131 |
actcgatgtccaaaaccagagagctttcgtttcctggagaa |
171 |
Q |
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| T |
18173813 |
acacggtgtccaaaaccactgagctttcgtttcctagagaa |
18173773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 18173645 - 18173582
Alignment:
| Q |
314 |
acctggttttgacaccttcaatgaattctggaatgttctcaacagttctgatttcacttagcat |
377 |
Q |
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| T |
18173645 |
acctggctttaacaccttcaatgaactctggaatgttatcaacacttccaatttcactcagcat |
18173582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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