View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_low_11 (Length: 242)
Name: NF16417_low_11
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_low_11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 41529886 - 41530129
Alignment:
| Q |
18 |
actttttcttcgaatccacctttaatctattatagttcaactaatttgagttaaagattaagaaaacgaaagttatggattcaagtcttaacaataaaaa |
117 |
Q |
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| T |
41529886 |
actttttcttcaaatccacctttaatctattatagttcaactaatttgagttaaagattaagaaactgaaagttatggattcaagtcttaacaataaaaa |
41529985 |
T |
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| Q |
118 |
taaacttacataacaattaatataatattaacggttattctgtta-tgggacttatc------------------attttctcacaatgacataggaacc |
198 |
Q |
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| T |
41529986 |
taaacttacataacaattaatataatattaacggttattctgttagtgggacttatcattttctcacaatgacatattttctcacaatgacataggaacc |
41530085 |
T |
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| Q |
199 |
aattgacagggggatgtctgctgatatctggcataagcaagtcc |
242 |
Q |
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| T |
41530086 |
aattgacagggggatgtctgctgatatctggcataagcaagtcc |
41530129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 41512905 - 41512967
Alignment:
| Q |
20 |
tttttcttcgaatccacctttaatctattatagttcaactaatttgagttaaagattaagaaa |
82 |
Q |
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| T |
41512905 |
tttttcttcaaatccaactctaatccattatagatcaactaatttgagctaaagattaagaaa |
41512967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 41512974 - 41513016
Alignment:
| Q |
102 |
gtcttaacaataaaaataaacttacataacaattaatataata |
144 |
Q |
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| T |
41512974 |
gtcttgacaataagaataaactaacataacaattaatataata |
41513016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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