View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_low_2 (Length: 415)
Name: NF16417_low_2
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 24 - 401
Target Start/End: Original strand, 33966008 - 33966390
Alignment:
| Q |
24 |
gaggctacattgattttctattattcaagcttaagaatacgtattataaatgtttaaatactatcgttcagtttacaagattatccctgaatcataccat |
123 |
Q |
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| T |
33966008 |
gaggctacattgattttcgattattcaagcttaggaatacatattataagtgttttaatactatagtttagtttacaagattatccctgaatcgtaccat |
33966107 |
T |
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| Q |
124 |
tgaggactccacgccaataagggtacnnnnnnnntaa----ctaaatctttagtcaaagactaataatctgagaattctgatgatagaaactcacaagga |
219 |
Q |
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| T |
33966108 |
tgaggactccgcaccaataagggtacaaaaaaaaaaaacaactaaatctttagtcaaagactaataatctgagaattctaatgatagaaactcataagga |
33966207 |
T |
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| Q |
220 |
aaaaacacaagaagaaacaaa-gttgtctgtgtaatctctttccaacaacattttatgtgtaaactaaaaaacataacataataccaaatgcagacaaac |
318 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33966208 |
aaaaacacaagaagaaacaaaagttgtctgtgtaatctctttccaacaacattgtatgtgtaaactaaaaaacataacacaataccaaatgcagacaaac |
33966307 |
T |
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| Q |
319 |
accaaaattcatctctgacaaaaacaaacatcaaattattcaaaaatgttggctactcaatttggtccgacatcaaggttttt |
401 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33966308 |
accaaaattcatctctgacaaaaacaaacatcaagttattcaaaaatgttggctactcaatttggtccgacatcaaggttttt |
33966390 |
T |
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