View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_low_6 (Length: 299)
Name: NF16417_low_6
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 41535642 - 41535373
Alignment:
| Q |
18 |
aatttaatcaagccacactcgtctatttgtatgtttggattggtgtcgtatttagacaaaatcgtgttgaaaaccatggcaacacagaagcttgatatac |
117 |
Q |
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| T |
41535642 |
aatttaatcaagccacactcgtctatttgtatgtttggattggcgtcgtatttagacaaaatcgcgttgaaaaccatggcaacacagaagcttgatatac |
41535543 |
T |
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| Q |
118 |
tagctttagaatttccacaaccaccatgctttgcgaagcggtattggtttggcaaacacttatccaacggaggtttaagcaatgcgagtttcgagagttt |
217 |
Q |
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| T |
41535542 |
tagcttcagaatttccacaaccaccatgctttgcgaagcggtattggtttggcaaacacttatccaacggaggtttaagcaatgccagtttcgagagt-- |
41535445 |
T |
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| Q |
218 |
agtttagactctttgctctccgctgaaagacaaagttactgaggtcatggtcaacagatcgtcatccctttgctt |
292 |
Q |
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| T |
41535444 |
---ttagactctttgctctccgctgaaagacaaagttaccgaggtcatggtcaacagatcgtcatcccattgctt |
41535373 |
T |
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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 26135483 - 26135617
Alignment:
| Q |
50 |
gtttggattggtgtcgtatttagacaaaatcgtgttgaaaaccatggcaacacagaagcttgatatactagctttagaatttccacaaccaccatgcttt |
149 |
Q |
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| T |
26135483 |
gtttggattggtgtcgtattaggacaaaatggcgttgaaaaccacggcaatgcagaagcttgatatactagcttctgaattttcacggcaaccgtgcatt |
26135582 |
T |
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| Q |
150 |
gcgaagcggtattggtttggcaaacacttatccaa |
184 |
Q |
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| T |
26135583 |
gggacgcggtattagattggcaaacgcttatccaa |
26135617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 26937714 - 26937629
Alignment:
| Q |
46 |
gtatgtttggattggtgtcgtatttagacaaaatcgtgttgaaaaccatggcaacacagaagcttgatatactagctttagaattt |
131 |
Q |
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| T |
26937714 |
gtatgtttggaatggcatcgtatttggactaaatcgcggtgaaaaacacggcaacacagaagcttgacatactagcttcagaattt |
26937629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 38170106 - 38170029
Alignment:
| Q |
44 |
ttgtatgtttggattggtgtcgtatttagacaaaatcgtgttgaaaaccatggcaacacagaagcttgatatactagc |
121 |
Q |
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| T |
38170106 |
ttgtatgtttggattggcgtcgtatttggataaaattgcattggaaaccatgacaacacagaagcttgatatattagc |
38170029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 20791015 - 20791099
Alignment:
| Q |
46 |
gtatgtttggattggtgtcgtatttagacaaaatcgtgttgaaaaccatggcaacacagaagcttgatatactagctttagaatt |
130 |
Q |
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| T |
20791015 |
gtatgtttggaatggcatcagatttggacaaaatcgcgttgaaaacgacggcaacccagaagcttgatatactagcttcagaatt |
20791099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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