View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16417_low_7 (Length: 286)
Name: NF16417_low_7
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 42447957 - 42447697
Alignment:
| Q |
11 |
caaaggtcctagaaagtgtagtgctcat-tggtacttgtagtttccgaaacttcaagttttgggacgaattagttcgaactcttggtgagccgtagttag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447957 |
caaaggtcctagaaagtgtagtgctcatatggtacttgtagtttccgaaacttcaagttttgggacgaattagttcgaactcttggtgagccgtagttag |
42447858 |
T |
|
| Q |
110 |
ctagcaattttaagaatatgttgctcgaagagagtctatagttcgtgatgaacctcttagggtattgatgctcgcgaggaactcataatttgtgaaaatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447857 |
ctagcaattttaagaatatgttgctcgaagagagtctatagttcgtgatgaacctcttagggtattgatgctcgcgaggaactcataatttgtgaaaatg |
42447758 |
T |
|
| Q |
210 |
acttttaagattgtggtgctcgcaagagagctttaatggttcgtgaagaacgtgagggaat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447757 |
acttttaagattgtggtgctcgcaagagagctttaatggttcgtgaagaacgtgagggaat |
42447697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University