View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_low_8 (Length: 265)
Name: NF16417_low_8
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 21327934 - 21328184
Alignment:
| Q |
1 |
atatatttcatcgtcataccgcatatgcagctacnnnnnnnnnnntcaaatcataaacaatgaatgtaaacaattacaaaatgaacataactattactaa |
100 |
Q |
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| T |
21327934 |
atatatttcatcgtcataccgcatatgcagctacaaaaaaaaaaatcaaatcataaacaatgaatgtaaacaattacaaaatgaacataactattactaa |
21328033 |
T |
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| Q |
101 |
taataacagaaagaaataactgttgct----gatgcaaacaaaaaacacataacatgaaatagctgcaataatggaatactagaagtgaatggtttcaag |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21328034 |
taataacagaaagaaataactgttgctcgctgatgcaaacaaaaaacacataacatgaaatagctgcaataatggaatactagaagtgaatggtttctag |
21328133 |
T |
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| Q |
197 |
aaagaacgtagatacaaatgaatgaatatccctacacggtgctaagctctt |
247 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21328134 |
aaagaacgtagatacaaatgaatgaatatccctatacggtgctaagctctt |
21328184 |
T |
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