View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16417_low_9 (Length: 248)
Name: NF16417_low_9
Description: NF16417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16417_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2794597 - 2794357
Alignment:
| Q |
1 |
tccaaattcgaccccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattct |
100 |
Q |
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| T |
2794597 |
tccaaattcgaccccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattct |
2794498 |
T |
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| Q |
101 |
gcatcagaaacttaacaagactaaacttattcaaatcaaaataccccagcaacctcttctccacttctcggtcatcagcctcacccaaaaccttcaacac |
200 |
Q |
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| T |
2794497 |
gcattagaaacttaacaagactaaacttattcaaatcaaaataccccaacaacctcttctccacttctctgtcatcagcctcacccaaaaccttcaacac |
2794398 |
T |
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| Q |
201 |
ctcttcagcaagccttcgacaattttctggatcaatctctg |
241 |
Q |
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| T |
2794397 |
ctcttcagcaagccttcgacaattttccggatcaatctctg |
2794357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 29262049 - 29261933
Alignment:
| Q |
14 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
113 |
Q |
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||||||||||||||||||| | || |||||||| ||||| ||||| ||||| | ||||||||||| ||| |||| | |||| ||| || |||||| |
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| T |
29262049 |
ccttcatctcttcctcaatcgtctctctctcttcctgatcttgtgccctcgccaaacgagtacaccacaaaattttcagcctatttcgcaacaaaaactt |
29261950 |
T |
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| Q |
114 |
aacaagactaaacttat |
130 |
Q |
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| T |
29261949 |
aataagactaaacttat |
29261933 |
T |
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