View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16418_high_1 (Length: 628)
Name: NF16418_high_1
Description: NF16418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16418_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 608
Target Start/End: Original strand, 2816272 - 2816870
Alignment:
| Q |
9 |
gagatgaaataagttaaaattacattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacattta |
108 |
Q |
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| T |
2816272 |
gagatgaaataagttaaaattatattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacattta |
2816371 |
T |
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| Q |
109 |
aattcattcaacacacacaatttcgatattcatacatatttattttctcatcaaagtcataaaaagtcatataagtcatgggagtcataattgctacggt |
208 |
Q |
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| T |
2816372 |
aattcattcaacacacacaatttcgatattcatagatatttattttctcatcaaagtcataaaaagtcatctaagtcatgggagtcataattgctacggt |
2816471 |
T |
|
| Q |
209 |
atttaaataccgatatacgtcgttcatcagaaaaattaggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacatatt |
308 |
Q |
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| T |
2816472 |
atttaaataccgatatacgttgttcgtcagaaaaattgggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacagatt |
2816571 |
T |
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| Q |
309 |
gatcggctatgtttcatgggaaatttatttcataataccatatagatcatcataattttttatgccatccaacactatggtctgaaccagcccgcatatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
2816572 |
gatcggctatgtttcatgggaaatttatttcataataccatatagatcatcataattttttatgccat-cgacactatggtccgaaccagcccgcatatc |
2816670 |
T |
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| Q |
409 |
tacaaagtgtccagagtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcctgtgttatgttatgaggaaacaga |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |
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| T |
2816671 |
tacaaagtgtccagagtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcccgtgttatgttatggggaaataga |
2816770 |
T |
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| Q |
509 |
acatgcgtgttctattatgttcaaggtgtatctggtcgtaactcccaaacttgagtgatcaggagttggaagttaacttctaaacagttccagagttacg |
608 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816771 |
acatgcatgttctattatgttcaaggcgtatctggtcgtaactcccaaacttgagcgatcaggagttggaagttaacttctaaacagttccagagttacg |
2816870 |
T |
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